MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-203-v1

Family name MIR-203 (all species)
Seed UGAAAUG
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-203
Paralogues Xtr-Mir-203-v2 
Orthologues Aca-Mir-203-v1  Ami-Mir-203-v1  Bta-Mir-203-v1  Cfa-Mir-203-v1  Cja-Mir-203-v1  Cpi-Mir-203-v1  Cpo-Mir-203-v1  Dno-Mir-203-v1  Eca-Mir-203-v1  Ete-Mir-203-v1  Gga-Mir-203-v1  Gja-Mir-203-v1  Hsa-Mir-203-v1  Lch-Mir-203  Loc-Mir-203-v1  Mdo-Mir-203-v1  Mml-Mir-203-v1  Mmr-Mir-203-v1  Mmu-Mir-203-v1  Mun-Mir-203-v1  Neu-Mir-203-v1  Oan-Mir-203-v1  Ocu-Mir-203-v1  Pab-Mir-203-v1  Pbv-Mir-203-v1  Rno-Mir-203-v1  Sha-Mir-203-v1  Spt-Mir-203  Sto-Mir-203-v1  Tgu-Mir-203-v1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)		 chr8: 77988327-77988386 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-203-v1)		 Mir-203-v1 chr8: 77988327-77988386 [+] UCSC Ensembl
Mir-203-v2 chr8: 77988327-77988386 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGAUCACACAGAUUUCUGUCUCCCUGGCCGAGUGGUUCUUAACAGUUCAACAGUUCUCUAUCGAAAUUGUGAAAUGUUUAGGACCACUUGAUCCGGGUGACUCUCUCUGCCAAGGGUGCA
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Structure
        10          20        30        40        50          
GGAUCACACAGAUUUCU--|  U   U GC           U    G    A   UUCUCU 
                   GUC CCC G  CGAGUGGUUCU AACA UUCA CAG      \
                   CAG GGG C  GUUCACCAGGA UUGU AAGU GUU      A
ACGUGGGAACCGUCUCUCU^  U   C UA           U    A    -   AAAGCU 
.       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
An Br Em Em He Ve
Star sequence

Xtr-Mir-203-v1_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGUGGUUCUUAACAGUUCAACAG -23
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Mature sequence

Xtr-Mir-203-v1_3p
mirBase accessionMIMAT0003695
Sequence 
38- GUGAAAUGUUUAGGACCACUUG -60
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Proposed targets TargetScanVert: xtr-miR-203