MirGeneDB 3.0
MirGeneDB ID

Cpo-Mir-203-v1

Family name MIR-203 (all species)
Seed UGAAAUG
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-203
Paralogues Cpo-Mir-203-v2 
Orthologues Aca-Mir-203-v1  Ami-Mir-203-v1  Bta-Mir-203-v1  Cfa-Mir-203-v1  Cja-Mir-203-v1  Cpi-Mir-203-v1  Dno-Mir-203-v1  Eca-Mir-203-v1  Ete-Mir-203-v1  Gga-Mir-203-v1  Gja-Mir-203-v1  Hsa-Mir-203-v1  Lch-Mir-203  Loc-Mir-203-v1  Mdo-Mir-203-v1  Mml-Mir-203-v1  Mmr-Mir-203-v1  Mmu-Mir-203-v1  Mun-Mir-203-v1  Neu-Mir-203-v1  Oan-Mir-203-v1  Ocu-Mir-203-v1  Pab-Mir-203-v1  Pbv-Mir-203-v1  Rno-Mir-203-v1  Sha-Mir-203-v1  Spt-Mir-203  Sto-Mir-203-v1  Tgu-Mir-203-v1  Xtr-Mir-203-v1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(cavPor3)		 scaffold_111: 3483108-3483167 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-203-v1)		 Mir-203-v1 scaffold_111: 3483108-3483167 [+] UCSC
Mir-203-v2 scaffold_111: 3483108-3483167 [+] UCSC
Precursor
(pre-Mir +30nt flank)
UGAGGUGCCGCAGACUUGCCCGCCGGGUCCAGUGGUUCUUAACAGUUCAACAGUUCUGUAGGGCAAUUGUGAAAUGUUUAGGACCACUAGACCCGGCGCGCUCGGCGACGGCGGGGGCGA
Get precursor sequence
Structure
        10          20        30        40        50          
UGAGGUGCCGCAGACUU--| C         C         U    G    A   UUCUGU 
                   GC CGCCGGGUC AGUGGUUCU AACA UUCA CAG      \
                   CG GCGGCCCAG UCACCAGGA UUGU AAGU GUU      A
AGCGGGGGCGGCAGCGGCU^ C         A         U    A    -   AACGGG 
.       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Star sequence

Cpo-Mir-203-v1_5p*
mirBase accessionMIMAT0047097
Sequence 
0- AGUGGUUCUUAACAGUUCAACAG -23
Get sequence
Mature sequence

Cpo-Mir-203-v1_3p
mirBase accessionMIMAT0047098
Sequence 
38- GUGAAAUGUUUAGGACCACUAG -60
Get sequence