MirGeneDB ID | Pab-Mir-203-v1 |
---|---|
Family name | MIR-203 (all species) |
Seed | UGAAAUG |
Species | Sumatran orangutan (Pongo abelii) |
MiRBase ID | |
Paralogues | Pab-Mir-203-v2 |
Orthologues | Aca-Mir-203-v1 Ami-Mir-203-v1 Bta-Mir-203-v1 Cfa-Mir-203-v1 Cja-Mir-203-v1 Cpi-Mir-203-v1 Cpo-Mir-203-v1 Dno-Mir-203-v1 Eca-Mir-203-v1 Ete-Mir-203-v1 Gga-Mir-203-v1 Gja-Mir-203-v1 Hsa-Mir-203-v1 Lch-Mir-203 Loc-Mir-203-v1 Mdo-Mir-203-v1 Mml-Mir-203-v1 Mmr-Mir-203-v1 Mmu-Mir-203-v1 Mun-Mir-203-v1 Neu-Mir-203-v1 Oan-Mir-203-v1 Ocu-Mir-203-v1 Pbv-Mir-203-v1 Rno-Mir-203-v1 Sha-Mir-203-v1 Spt-Mir-203 Sto-Mir-203-v1 Tgu-Mir-203-v1 Xtr-Mir-203-v1 |
Node of Origin (locus) | Vertebrata |
Node of Origin (family) | Vertebrata |
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054694.2: 108575160-108575219 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | GACGGUGUUGGGGACUCGCGCGCUGGGUCCAGUGGUUCUUAACAGUUCAACAGUUCUGUAGCGCAAUUGUGAAAUGUUUAGGACCACUAGACCCGGCGGGCACGGCGACAGCGACGGAGCGet precursor sequence |
Structure | 10 20 30 40 50 GACGGUGUUGGGGACUC--| G C U G A UUCUGU GC CGCUGGGUC AGUGGUUCU AACA UUCA CAG \ CG GCGGCCCAG UCACCAGGA UUGU AAGU GUU A CGAGGCAGCGACAGCGGCA^ G A U A - AACGCG . 110 100 90 80 70 |
Deep sequencing | |
3' NTU | No |
Motifs | CNNC at 3p(+17) |
Star sequence | Pab-Mir-203-v1_5p* |
mirBase accession | None |
Sequence |
0- AGUGGUUCUUAACAGUUCAACAG -23
Get sequence
|
Mature sequence | Pab-Mir-203-v1_3p |
mirBase accession | None |
Sequence |
38- GUGAAAUGUUUAGGACCACUAG -60
Get sequence
|