MirGeneDB 2.1
MirGeneDB ID

Xtr-Mir-203-v2

Family name MIR-203 (all species)
Seed GAAAUGU
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-203
Paralogues Xtr-Mir-203-v1 
Orthologues Aca-Mir-203-v2  Ami-Mir-203-v2  Bta-Mir-203-v2  Cfa-Mir-203-v2  Cpi-Mir-203-v2  Cpo-Mir-203-v2  Dno-Mir-203-v2  Ete-Mir-203-v2  Gga-Mir-203-v2  Gja-Mir-203-v2  Hsa-Mir-203-v2  Lch-Mir-203  Loc-Mir-203-v2  Mdo-Mir-203-v2  Mml-Mir-203-v2  Mmu-Mir-203-v2  Mun-Mir-203-v2  Oan-Mir-203-v2  Ocu-Mir-203-v2  Pbv-Mir-203-v2  Rno-Mir-203-v2  Sha-Mir-203-v2  Spt-Mir-203  Sto-Mir-203-v2  Tgu-Mir-203-v2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)		 chr8: 77988327-77988386 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-203-v2)		 Mir-203-v1 chr8: 77988327-77988386 [+] UCSC Ensembl
Mir-203-v2 chr8: 77988327-77988386 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGAUCACACAGAUUUCUGUCUCCCUGGCCGAGUGGUUCUUAACAGUUCAACAGUUCUCUAUCGAAAUUGUGAAAUGUUUAGGACCACUUGAUCCGGGUGACUCUCUCUGCCAAGGGUGCA
Get precursor sequence
Structure
        10          20        30        40        50          
GGAUCACACAGAUUUCU--|  U   U GC           U    G    A  GUUCUCU 
                   GUC CCC G  CGAGUGGUUCU AACA UUCA CA       \
                   CAG GGG C  GUUCACCAGGA UUGU AAGU GU       A
ACGUGGGAACCGUCUCUCU^  U   C UA           U    A    -  UAAAGCU 
.       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Br Em Em Em Em He
Star sequence

Xtr-Mir-203-v2_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGUGGUUCUUAACAGUUCAACA -22
Get sequence
Mature sequence

Xtr-Mir-203-v2_3p
mirBase accessionMIMAT0003695
Sequence 
39- UGAAAUGUUUAGGACCACUUG -60
Get sequence
Proposed targets TargetScanVert: xtr-miR-203