| MirGeneDB ID | Sha-Mir-203-v2 |
|---|
| Family name |
MIR-203 (all species) |
|---|
| Seed |
GAAAUGU |
|---|
| Species |
Tasmanian devil (Sarcophilus harrisii) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Sha-Mir-203-v1
|
|---|
| Orthologues |
Aca-Mir-203-v2
Ami-Mir-203-v2
Bta-Mir-203-v2
Cfa-Mir-203-v2
Cja-Mir-203-v2
Cpi-Mir-203-v2
Cpo-Mir-203-v2
Dno-Mir-203-v2
Eca-Mir-203-v2
Ete-Mir-203-v2
Gga-Mir-203-v2
Gja-Mir-203-v2
Hsa-Mir-203-v2
Lch-Mir-203
Loc-Mir-203-v2
Mdo-Mir-203-v2
Mml-Mir-203-v2
Mmr-Mir-203-v2
Mmu-Mir-203-v2
Mun-Mir-203-v2
Neu-Mir-203-v2
Oan-Mir-203-v2
Ocu-Mir-203-v2
Pab-Mir-203-v2
Pbv-Mir-203-v2
Rno-Mir-203-v2
Spt-Mir-203
Sto-Mir-203-v2
Tgu-Mir-203-v2
Xtr-Mir-203-v2
|
|---|
| Node of Origin (locus) |
Vertebrata
|
|---|
| Node of Origin (family) |
Vertebrata
|
|---|
Genome context
(DEVIL_add) |
GL834583.1: 1098933-1098992 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UUUCGACCCGGACCCCAGCUUCCCUGGUGCAGUGGUUCUUAACAGUUCAACAGUUCUAUUAAAAAAUUGUGAAAUGUUUAGGACCACUCUAUCAGGGCAGGCCUCGGCAGCCGCAACGGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUUCGACCCGGACCCCA- -| C U G A GUUCUAU
GCUU CCCUGGUG AGUGGUUCU AACA UUCA CA \
CGGA GGGACUAU UCACCAGGA UUGU AAGU GU U
AGGCAACGCCGACGGCUC C^ C U A - UAAAAAA
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Yes
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
| |
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Sha-Mir-203-v2_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGUGGUUCUUAACAGUUCAACA -22
Get sequence
|
|---|
| Mature sequence |
Sha-Mir-203-v2_3p |
| mirBase accession | None |
|---|
| Sequence |
39- UGAAAUGUUUAGGACCACUCU -60
Get sequence
|
|---|
