MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-214-v1

Family name MIR-214 (all species)
Seed CAGCAGG
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-214-v2 
Orthologues Aca-Mir-214-v1  Ami-Mir-214-v1  Bta-Mir-214-v1  Cfa-Mir-214-v1  Cja-Mir-214  Cli-Mir-214-v1  Cmi-Mir-214-v1  Cpi-Mir-214-v1  Cpo-Mir-214-v1  Dno-Mir-214-v1  Eca-Mir-214-v1  Ete-Mir-214-v1  Gga-Mir-214-v1  Hsa-Mir-214-v1  Laf-Mir-214  Lch-Mir-214  Loc-Mir-214-v1  Mdo-Mir-214-v1  Mml-Mir-214-v1  Mmr-Mir-214-v1  Mmu-Mir-214-v1  Mun-Mir-214  Oan-Mir-214-v1  Ocu-Mir-214-v1  Pab-Mir-214  Pbv-Mir-214-v1  Rno-Mir-214-v1  Sha-Mir-214-v1  Spt-Mir-214  Sto-Mir-214-v1  Tgu-Mir-214-v1  Xtr-Mir-214-v1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015163693.1: 17069-17131 [-]
Precursor
(pre-Mir +30nt flank)
GGGGCUGGCUGGACAGAGUUGUCACGUGUCUGCCUGUCUACACUUGCUGUGCAGAACAUCCUCUCACCUGUACAGCAGGCACAGACAGGCAGUCACAUGACAACCCAGCCUGAGAGACCACCA
Get precursor sequence
Structure
        10          20        30        40        50        60 
GGGGCUGGCUGGACAGA--|      C   U          ACA          AGAACAUC 
                   GUUGUCA GUG CUGCCUGUCU   CUUGCUGUGC        \
                   CAACAGU CAC GACGGACAGA   GGACGACAUG        C
ACCACCAGAGAGUCCGACC^      A   U          CAC          UCCACUCU 
 120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
-   +
To
Star sequence

Gja-Mir-214-v1_5p*
mirBase accessionNone
Sequence 
0- UGCCUGUCUACACUUGCUGUGC -22
Get sequence
Mature sequence

Gja-Mir-214-v1_3p
mirBase accessionNone
Sequence 
41- ACAGCAGGCACAGACAGGCAGU -63
Get sequence