Mir-214-v1

MirGeneDB ID

Cli-Mir-214-v1

Family name

MIR-214 (all species)

Seed

CAGCAGG

Species

Rock pigeon (Columba livia)

MiRBase ID

cli-mir-214

Paralogues

Cli-Mir-214-v2

Orthologues

Aca-Mir-214-v1 Ami-Mir-214-v1 Bta-Mir-214-v1 Cfa-Mir-214-v1 Cja-Mir-214 Cmi-Mir-214-v1 Cpi-Mir-214-v1 Cpo-Mir-214-v1 Dno-Mir-214-v1 Eca-Mir-214-v1 Ete-Mir-214-v1 Gga-Mir-214-v1 Gja-Mir-214-v1 Hsa-Mir-214-v1 Laf-Mir-214 Lch-Mir-214 Loc-Mir-214-v1 Mdo-Mir-214-v1 Mml-Mir-214-v1 Mmr-Mir-214-v1 Mmu-Mir-214-v1 Mun-Mir-214 Oan-Mir-214-v1 Ocu-Mir-214-v1 Pab-Mir-214 Pbv-Mir-214-v1 Rno-Mir-214-v1 Sha-Mir-214-v1 Spt-Mir-214 Sto-Mir-214-v1 Tgu-Mir-214-v1 Xtr-Mir-214-v1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Gnathostomata

Genome context
(colLiv2)

scaffold7: 10456145-10456207 [+]

Clustered miRNAs
(< 50kb from Mir-214-v1)

Mir-199-P1-v1 scaffold7: 10450277-10450337 [+]
Mir-199-P1-v2 scaffold7: 10450277-10450337 [+]
Mir-199-P1-v3 scaffold7: 10450277-10450337 [+]
Mir-214-v1 scaffold7: 10456145-10456207 [+]
Mir-214-v2 scaffold7: 10456145-10456207 [+]

Precursor
(pre-Mir +30nt flank)

GGGACUGGCUGGACGGAGUUGUCAUGUGUCUGCCUGUCUACACUUGCUGUGCAGAACAUCCUCUCACCUGUACAGCAGGCACAGACAGGCAGUCGCAUGACAACCCAGCCUGAGGGACAGCCG

Get precursor sequence

Structure

        10          20        30        40        50        60 
GGGACUGGCUGGACGGA--|          U          ACA          AGAACAUC 
                   GUUGUCAUGUG CUGCCUGUCU   CUUGCUGUGC        \
                   CAACAGUACGC GACGGACAGA   GGACGACAUG        C
GCCGACAGGGAGUCCGACC^          U          CAC          UCCACUCU 
 120       110       100        90        80        70