Mir-214-v1

MirGeneDB ID

Rno-Mir-214-v1

Family name

MIR-214 (all species)

Seed

CAGCAGG

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-214

Paralogues

Rno-Mir-214-v2

Orthologues

Aca-Mir-214-v1 Ami-Mir-214-v1 Bta-Mir-214-v1 Cfa-Mir-214-v1 Cli-Mir-214-v1 Cmi-Mir-214-v1 Cpi-Mir-214-v1 Cpo-Mir-214-v1 Dno-Mir-214-v1 Ete-Mir-214-v1 Gga-Mir-214-v1 Gja-Mir-214-v1 Hsa-Mir-214-v1 Lch-Mir-214 Loc-Mir-214-v1 Mdo-Mir-214-v1 Mml-Mir-214-v1 Mmu-Mir-214-v1 Mun-Mir-214 Oan-Mir-214-v1 Ocu-Mir-214-v1 Pbv-Mir-214-v1 Sha-Mir-214-v1 Spt-Mir-214 Sto-Mir-214-v1 Tgu-Mir-214-v1 Xtr-Mir-214-v1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Gnathostomata

Genome context
(rn6)

chr13: 80130934-80130996 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-214-v1)

Mir-199-P1-v1 chr13: 80125517-80125577 [+] UCSC Ensembl
Mir-199-P1-v2 chr13: 80125517-80125577 [+] UCSC Ensembl
Mir-199-P1-v3 chr13: 80125517-80125577 [+] UCSC Ensembl
Mir-214-v1 chr13: 80130934-80130996 [+] UCSC Ensembl
Mir-214-v2 chr13: 80130934-80130996 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGUCCUGGAUGGACAGAGUUGUCAUGUGUCUGCCUGUCUACACUUGCUGUGCAGAACAUCCGCUCACCUGUACAGCAGGCACAGACAGGCAGUCACAUGACAACCCAGCCUGAAUGACAACCA

Get precursor sequence

Structure

        10          20        30        40        50        60 
GGUCCUGGAUGGACAGA--|          U          ACA          AGAACAUC 
                   GUUGUCAUGUG CUGCCUGUCU   CUUGCUGUGC        \
                   CAACAGUACAC GACGGACAGA   GGACGACAUG        C
ACCAACAGUAAGUCCGACC^          U          CAC          UCCACUCG 
 120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ad	Ad	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Dr	Dr	Du	Du	Du	Du	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Li	Li	Li	Li	Me	Me	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Ov	Pa	Pa	St	St	St	Te	Ut	Wh	Br	Fa	He	Ki	La	Li	Li	Lu	Mu	Pa	Sk	Sm	Sp	St	Te	Th

Star sequence

Rno-Mir-214-v1_5p*

mirBase accession

MIMAT0017159

Sequence

0- UGCCUGUCUACACUUGCUGUGC -22

Get sequence

Proposed targets

TargetScanVert: rno-miR-214-5p
miRDB: MIMAT0017159

Mature sequence

Rno-Mir-214-v1_3p

mirBase accession

MIMAT0000885

Sequence

41- ACAGCAGGCACAGACAGGCAGU -63

Get sequence

Proposed targets

microrna.org: MIMAT0000885
TargetScanVert: rno-miR-214-3p
miRDB: MIMAT0000885