Mir-214-v1

MirGeneDB ID

Ami-Mir-214-v1

Family name

MIR-214 (all species)

Seed

CAGCAGG

Species

American alligator (Alligator mississippiensis)

MiRBase ID

ami-mir-214

Paralogues

Ami-Mir-214-v2

Orthologues

Aca-Mir-214-v1 Bta-Mir-214-v1 Cfa-Mir-214-v1 Cja-Mir-214 Cli-Mir-214-v1 Cmi-Mir-214-v1 Cpi-Mir-214-v1 Cpo-Mir-214-v1 Dno-Mir-214-v1 Eca-Mir-214-v1 Ete-Mir-214-v1 Gga-Mir-214-v1 Gja-Mir-214-v1 Hsa-Mir-214-v1 Laf-Mir-214 Lch-Mir-214 Loc-Mir-214-v1 Mdo-Mir-214-v1 Mml-Mir-214-v1 Mmr-Mir-214-v1 Mmu-Mir-214-v1 Mun-Mir-214 Oan-Mir-214-v1 Ocu-Mir-214-v1 Pab-Mir-214 Pbv-Mir-214-v1 Rno-Mir-214-v1 Sha-Mir-214-v1 Spt-Mir-214 Sto-Mir-214-v1 Tgu-Mir-214-v1 Xtr-Mir-214-v1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Gnathostomata

Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)

NW_017709598.1: 575720-575782 [-] UCSC

Clustered miRNAs
(< 50kb from Mir-214-v1)

Mir-214-v1 NW_017709598.1: 575720-575782 [-] UCSC
Mir-214-v2 NW_017709598.1: 575720-575782 [-] UCSC
Mir-199-P1-v1 NW_017709598.1: 581638-581698 [-] UCSC
Mir-199-P1-v2 NW_017709598.1: 581638-581698 [-] UCSC
Mir-199-P1-v3 NW_017709598.1: 581638-581698 [-] UCSC

Precursor
(pre-Mir +30nt flank)

GGGAUUGGCUGGACGGAGUUGUCAUGUGUCUGCCUGUCUACACUUGCUGUGCAGAACAUCCACUCACCUGUACAGCAGGCACAGACAGGCAGUCACAUGACAACCCAGCCUGAAUGACAACCA

Get precursor sequence

Structure

        10          20        30        40        50        60 
GGGAUUGGCUGGACGGA--|          U          ACA          AGAACAUC 
                   GUUGUCAUGUG CUGCCUGUCU   CUUGCUGUGC        \
                   CAACAGUACAC GACGGACAGA   GGACGACAUG        C
ACCAACAGUAAGUCCGACC^          U          CAC          UCCACUCA 
 120       110       100        90        80        70