Mir-214-v1

MirGeneDB ID

Pbv-Mir-214-v1

Family name

MIR-214 (all species)

Seed

GCCUGUC

Species

Burmese python (Python bivittatus)

MiRBase ID

pbv-mir-214

Paralogues

Pbv-Mir-214-v2

Orthologues

Aca-Mir-214-v1 Ami-Mir-214-v1 Bta-Mir-214-v1 Cfa-Mir-214-v1 Cja-Mir-214 Cli-Mir-214-v1 Cmi-Mir-214-v1 Cpi-Mir-214-v1 Cpo-Mir-214-v1 Dno-Mir-214-v1 Eca-Mir-214-v1 Ete-Mir-214-v1 Gga-Mir-214-v1 Gja-Mir-214-v1 Hsa-Mir-214-v1 Laf-Mir-214 Lch-Mir-214 Loc-Mir-214-v1 Mdo-Mir-214-v1 Mml-Mir-214-v1 Mmr-Mir-214-v1 Mmu-Mir-214-v1 Mun-Mir-214 Oan-Mir-214-v1 Ocu-Mir-214-v1 Pab-Mir-214 Rno-Mir-214-v1 Sha-Mir-214-v1 Spt-Mir-214 Sto-Mir-214-v1 Tgu-Mir-214-v1 Xtr-Mir-214-v1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Gnathostomata

Genome context
(GCA_000186305.2_Python_molurus_bivittatus)

KE960262.1: 19350-19412 [+]

Clustered miRNAs
(< 50kb from Mir-214-v1)

Mir-199-P1-v1 KE960262.1: 14393-14453 [+]
Mir-199-P1-v2 KE960262.1: 14393-14453 [+]
Mir-199-P1-v3 KE960262.1: 14393-14453 [+]
Mir-214-v1 KE960262.1: 19350-19412 [+]
Mir-214-v2 KE960262.1: 19350-19412 [+]

Precursor
(pre-Mir +30nt flank)

UGGGCUGGCUGGAUAGAGUUGUCAUGUGUCUGCCUGUCUACACUUGCUGUGCAGAACAUCCUCUCACCUGUACAGCAGGCACAGACAGGCAGUCACAUGACAAUCCAGCCUGAAAGACAACCA

Get precursor sequence

Structure

        10          20        30        40        50        60 
UGGGCUGGCUGGAUAGA--|          U          ACA          AGAACAUC 
                   GUUGUCAUGUG CUGCCUGUCU   CUUGCUGUGC        \
                   UAACAGUACAC GACGGACAGA   GGACGACAUG        C
ACCAACAGAAAGUCCGACC^          U          CAC          UCCACUCU 
 120       110       100        90        80        70