Mir-214-v2

MirGeneDB ID

Ami-Mir-214-v2

Family name

MIR-214 (all species)

Seed

ACAGCAG

Species

American alligator (Alligator mississippiensis)

MiRBase ID

ami-mir-214

Paralogues

Ami-Mir-214-v1

Orthologues

Aca-Mir-214-v2 Bta-Mir-214-v2 Cfa-Mir-214-v2 Cja-Mir-214 Cli-Mir-214-v2 Cmi-Mir-214-v2 Cpi-Mir-214-v2 Cpo-Mir-214-v2 Dno-Mir-214-v2 Eca-Mir-214-v2 Ete-Mir-214-v2 Gga-Mir-214-v2 Gja-Mir-214-v2 Hsa-Mir-214-v2 Laf-Mir-214 Lch-Mir-214 Loc-Mir-214-v2 Mdo-Mir-214-v2 Mml-Mir-214-v2 Mmr-Mir-214-v2 Mmu-Mir-214-v2 Mun-Mir-214 Oan-Mir-214-v2 Ocu-Mir-214-v2 Pab-Mir-214 Pbv-Mir-214-v2 Rno-Mir-214-v2 Sha-Mir-214-v2 Spt-Mir-214 Sto-Mir-214-v2 Tgu-Mir-214-v2 Xtr-Mir-214-v2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Gnathostomata

Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)

NW_017709598.1: 575720-575782 [-] UCSC

Clustered miRNAs
(< 50kb from Mir-214-v2)

Mir-214-v1 NW_017709598.1: 575720-575782 [-] UCSC
Mir-214-v2 NW_017709598.1: 575720-575782 [-] UCSC
Mir-199-P1-v1 NW_017709598.1: 581638-581698 [-] UCSC
Mir-199-P1-v2 NW_017709598.1: 581638-581698 [-] UCSC
Mir-199-P1-v3 NW_017709598.1: 581638-581698 [-] UCSC

Precursor
(pre-Mir +30nt flank)

GGGAUUGGCUGGACGGAGUUGUCAUGUGUCUGCCUGUCUACACUUGCUGUGCAGAACAUCCACUCACCUGUACAGCAGGCACAGACAGGCAGUCACAUGACAACCCAGCCUGAAUGACAACCA

Get precursor sequence

Structure

        10          20        30        40        50        60 
GGGAUUGGCUGGACGGA--|          U          ACA           GAACAUC 
                   GUUGUCAUGUG CUGCCUGUCU   CUUGCUGUGCA       \
                   CAACAGUACAC GACGGACAGA   GGACGACAUGU       C
ACCAACAGUAAGUCCGACC^          U          CAC           CCACUCA 
 120       110       100        90        80        70