Mir-214-v2

MirGeneDB ID

Cpi-Mir-214-v2

Family name

MIR-214 (all species)

Seed

ACAGCAG

Species

Western painted turtle (Chrysemys picta bellii)

MiRBase ID

cpi-mir-214

Paralogues

Cpi-Mir-214-v1

Orthologues

Aca-Mir-214-v2 Ami-Mir-214-v2 Bta-Mir-214-v2 Cfa-Mir-214-v2 Cja-Mir-214 Cli-Mir-214-v2 Cmi-Mir-214-v2 Cpo-Mir-214-v2 Dno-Mir-214-v2 Eca-Mir-214-v2 Ete-Mir-214-v2 Gga-Mir-214-v2 Gja-Mir-214-v2 Hsa-Mir-214-v2 Laf-Mir-214 Lch-Mir-214 Loc-Mir-214-v2 Mdo-Mir-214-v2 Mml-Mir-214-v2 Mmr-Mir-214-v2 Mmu-Mir-214-v2 Mun-Mir-214 Oan-Mir-214-v2 Ocu-Mir-214-v2 Pab-Mir-214 Pbv-Mir-214-v2 Rno-Mir-214-v2 Sha-Mir-214-v2 Spt-Mir-214 Sto-Mir-214-v2 Tgu-Mir-214-v2 Xtr-Mir-214-v2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Gnathostomata

Genome context
(chrPic1)

JH585174: 220443-220505 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-214-v2)

Mir-214-v1 JH585174: 220443-220505 [-] UCSC Ensembl
Mir-214-v2 JH585174: 220443-220505 [-] UCSC Ensembl
Mir-199-P1-v1 JH585174: 227135-227195 [-] UCSC Ensembl
Mir-199-P1-v2 JH585174: 227135-227195 [-] UCSC Ensembl
Mir-199-P1-v3 JH585174: 227135-227195 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGGACUGGCUGGACGGAGUUGUCAUGUGUCUGCCUGUCUACACUUGCUGUGCAGAACAUCCUCUCACCUGUACAGCAGGCACAGACAGGCAGUCACAUGACAACCCAGCCUGAAUGACAACCA

Get precursor sequence

Structure

        10          20        30        40        50        60 
GGGACUGGCUGGACGGA--|          U          ACA           GAACAUC 
                   GUUGUCAUGUG CUGCCUGUCU   CUUGCUGUGCA       \
                   CAACAGUACAC GACGGACAGA   GGACGACAUGU       C
ACCAACAGUAAGUCCGACC^          U          CAC           CCACUCU 
 120       110       100        90        80        70