Mir-214-v2

MirGeneDB ID

Mmu-Mir-214-v2

Family name

MIR-214 (all species)

Seed

ACAGCAG

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-214

Paralogues

Mmu-Mir-214-v1

Orthologues

Aca-Mir-214-v2 Ami-Mir-214-v2 Bta-Mir-214-v2 Cfa-Mir-214-v2 Cli-Mir-214-v2 Cmi-Mir-214-v2 Cpi-Mir-214-v2 Cpo-Mir-214-v2 Dno-Mir-214-v2 Ete-Mir-214-v2 Gga-Mir-214-v2 Gja-Mir-214-v2 Hsa-Mir-214-v2 Lch-Mir-214 Loc-Mir-214-v2 Mdo-Mir-214-v2 Mml-Mir-214-v2 Mun-Mir-214 Oan-Mir-214-v2 Ocu-Mir-214-v2 Pbv-Mir-214-v2 Rno-Mir-214-v2 Sha-Mir-214-v2 Spt-Mir-214 Sto-Mir-214-v2 Tgu-Mir-214-v2 Xtr-Mir-214-v2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Gnathostomata

Genome context
(mm10)

chr1: 162223397-162223459 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-214-v2)

Mir-199-P1-v1 chr1: 162217844-162217904 [+] UCSC Ensembl
Mir-199-P1-v2 chr1: 162217844-162217904 [+] UCSC Ensembl
Mir-199-P1-v3 chr1: 162217844-162217904 [+] UCSC Ensembl
Mir-214-v1 chr1: 162223397-162223459 [+] UCSC Ensembl
Mir-214-v2 chr1: 162223397-162223459 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGGCCUGGCUGGACAGAGUUGUCAUGUGUCUGCCUGUCUACACUUGCUGUGCAGAACAUCCGCUCACCUGUACAGCAGGCACAGACAGGCAGUCACAUGACAACCCAGCCUGAAUGACCACCA

Get precursor sequence

Structure

        10          20        30        40        50        60 
GGGCCUGGCUGGACAGA--|          U          ACA           GAACAUC 
                   GUUGUCAUGUG CUGCCUGUCU   CUUGCUGUGCA       \
                   CAACAGUACAC GACGGACAGA   GGACGACAUGU       C
ACCACCAGUAAGUCCGACC^          U          CAC           CCACUCG 
 120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

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Star sequence

Mmu-Mir-214-v2_5p*

mirBase accession

MIMAT0004664

Sequence

0- UGCCUGUCUACACUUGCUGUGCA -23

Get sequence

Proposed targets

microrna.org: MIMAT0004664
TargetScanVert: mmu-miR-214-5p
miRDB: MIMAT0004664

Mature sequence

Mmu-Mir-214-v2_3p

mirBase accession

MIMAT0000661

Sequence

40- UACAGCAGGCACAGACAGGCAGU -63

Get sequence

Proposed targets

microrna.org: MIMAT0000661
TargetScanVert: mmu-miR-214-3p
miRDB: MIMAT0000661