| MirGeneDB ID | Laf-Mir-345-P3 |
|---|---|
| Family name | MIR-345 (all species) |
| Seed | CUGACUC |
| Species | African bush elephant (Loxodonta africana) |
| MiRBase ID | |
| Paralogues | Laf-Mir-345-P1 Laf-Mir-345-P2 |
| Orthologues | Bta-Mir-345 Cfa-Mir-345 Cja-Mir-345 Cpo-Mir-345 Dno-Mir-345 Eca-Mir-345 Ete-Mir-345 Hsa-Mir-345 Mml-Mir-345 Mmr-Mir-345 Pab-Mir-345 Rno-Mir-345 |
| Node of Origin (locus) | L. africana |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_000001905.1_Loxafr3.0) |
GL010036.1: 76277022-76277079 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | AUUCGCUAAGCAGAGACCCAACCCAGGUCUGCUGACUCCUAGUCCAGUGCUUGUGAUGGCCAUUGGGCCCUGAACUAGGGGCCUGGAGGCCUGGGUUUGAUUAUCGCCAGCCUCUGACGet precursor sequence |
| Structure | 10 20 30 40 50 AUUCGCUAAGCAGAGACCC--| G A- C U UGUGAU AACCCAGGUCU CUG CUCCUAGU CAG GCU G UUGGGUCCGGA GGU GGGGAUCA GUC CGG G CAGUCUCCGACCGCUAUUAGU^ - CC A C GUUACC 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Mature sequence | Laf-Mir-345-P3_5p |
| mirBase accession | None |
| Sequence |
0- GCUGACUCCUAGUCCAGUGCU -21
Get sequence
|
| Star sequence | Laf-Mir-345-P3_3p* (predicted) |
| mirBase accession | None |
| Sequence |
37- CCCUGAACUAGGGGCCUGGAG -58
Get sequence
|
