| MirGeneDB ID | Cja-Mir-345 |
|---|---|
| Family name | MIR-345 (all species) |
| Seed | CUGACUC |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-345 Cfa-Mir-345 Cpo-Mir-345 Dno-Mir-345 Eca-Mir-345 Ete-Mir-345 Hsa-Mir-345 Laf-Mir-345-P1 Laf-Mir-345-P2 Laf-Mir-345-P3 Mml-Mir-345 Mmr-Mir-345 Mmu-Mir-345-v1 Mmu-Mir-345-v2 Pab-Mir-345 Rno-Mir-345 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021924.1: 131125121-131125178 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UGGUUAGGAAGAGACCCAAACCCUAGGUCUGCUGACUCCUAGUCCAGGGCUCGUGAUAGCUGGUGUGCCCUGAAUGAGGAGUCUGGAGGCCUGUGUUUGAAUAUCGCCACCCUCUCUCGet precursor sequence |
| Structure | 10 20 30 40 50 UGGUUAGGAAGAGACCC---| CC G - A C UCGUGAU AAAC UAGGUCU CU GACUCCU GU CAGGGC A UUUG GUCCGGA GG CUGAGGA UA GUCCCG G CUCUCUCCCACCGCUAUAAG^ U- - U G A UGUGGUC 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Mature sequence | Cja-Mir-345_5p |
| mirBase accession | None |
| Sequence |
0- GCUGACUCCUAGUCCAGGGCUC -22
Get sequence
|
| Star sequence | Cja-Mir-345_3p* (predicted) |
| mirBase accession | None |
| Sequence |
36- GCCCUGAAUGAGGAGUCUGGAG -58
Get sequence
|
