MirGeneDB 3.0

MirGeneDB ID

Cpo-Mir-345

Family name MIR-345 (all species)
Seed CUGACUC
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-345
Paralogues
Orthologues Bta-Mir-345  Cfa-Mir-345  Cja-Mir-345  Dno-Mir-345  Eca-Mir-345  Ete-Mir-345  Hsa-Mir-345  Laf-Mir-345-P1  Laf-Mir-345-P2  Laf-Mir-345-P3  Mml-Mir-345  Mmr-Mir-345  Mmu-Mir-345-v1  Mmu-Mir-345-v2  Pab-Mir-345  Rno-Mir-345 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(cavPor3)
scaffold_111: 6113-6170 [+] UCSC
Precursor
(pre-Mir +30nt flank)
AUGCAAGGCCAGAGACCCAACCCCAGGGCUGCUGACUCCCAGUCCAGUGCUCGUGAUCCCAGCCGGGCCCUGAACUAGGGGUCUGGAGGCCUGGGUUUGAAUGUCGCCGGCCAGGCCC
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Structure
        10          20        30         40        50        
AUGCAAGGCCAGAGACC--|  C      G  G  -      C   C   U   CGUGAU 
                   CAA CCCAGG CU CU GACUCC AGU CAG GCU      C
                   GUU GGGUCC GA GG CUGGGG UCA GUC CGG      C
CCCGGACCGGCCGCUGUAA^  U      G  -  U      A   A   C   GCCGAC 
      110       100        90         80        70        60
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Mature sequence

Cpo-Mir-345_5p

mirBase accessionMIMAT0047182
Sequence
0- GCUGACUCCCAGUCCAGUGCU -21
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Star sequence

Cpo-Mir-345_3p*

mirBase accessionMIMAT0047183
Sequence
37- CCCUGAACUAGGGGUCUGGAG -58
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