| MirGeneDB ID | Pab-Mir-345 |
|---|---|
| Family name | MIR-345 (all species) |
| Seed | CUGACUC |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-345 Cfa-Mir-345 Cja-Mir-345 Cpo-Mir-345 Dno-Mir-345 Eca-Mir-345 Ete-Mir-345 Hsa-Mir-345 Laf-Mir-345-P1 Laf-Mir-345-P2 Laf-Mir-345-P3 Mml-Mir-345 Mmr-Mir-345 Mmu-Mir-345-v1 Mmu-Mir-345-v2 Rno-Mir-345 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054694.2: 104732559-104732616 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | AUAUUAAGCAGAGACCCAAACCCUAGGUCUGCUGACUCCUAGUCCAGGGCUCGUGAUGGCUGGUGGGCCCUGAACGAGGGGUCUGGAGGCCUGGGUUUGAAUAUCGCCAGCCUCUCUGGet precursor sequence |
| Structure | 10 20 30 40 50 AUAUUAAGCAGAGACCC---| U G - A C GUGAU AAACCC AGGUCU CU GACUCCU GU CAGGGCUC G UUUGGG UCCGGA GG CUGGGGA CA GUCCCGGG G GUCUCUCCGACCGCUAUAAG^ - - U G A UGGUC 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Mature sequence | Pab-Mir-345_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- GCUGACUCCUAGUCCAGGGCUC -22
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|
| Star sequence | Pab-Mir-345_3p* (predicted) |
| mirBase accession | None |
| Sequence |
36- GCCCUGAACGAGGGGUCUGGAG -58
Get sequence
|
