MirGeneDB ID | Eca-Mir-345 |
Family name |
MIR-345 (all species) |
Seed |
CCUGAAC |
Species |
Horse (Equus caballus) |
MiRBase ID |
eca-mir-345
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Paralogues |
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Orthologues |
Bta-Mir-345
Cfa-Mir-345
Cja-Mir-345
Cpo-Mir-345
Dno-Mir-345
Ete-Mir-345
Hsa-Mir-345
Laf-Mir-345-P1
Laf-Mir-345-P2
Laf-Mir-345-P3
Mml-Mir-345
Mmr-Mir-345
Mmu-Mir-345-v1
Mmu-Mir-345-v2
Pab-Mir-345
Rno-Mir-345
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Node of Origin (locus) |
Eutheria
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Node of Origin (family) |
Eutheria
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Genome context (GCA_002863925.1_EquCab3.0) |
CM009171.1: 42657514-42657571 [+]
UCSC
Ensembl
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Precursor (pre-Mir +30nt flank) |
UUCACUAAGCGGAGACCCAACCCCAGGUCUGCUGACUCCUAGUCCAGUGCUCGUGAUGGCUAGUGGGCCCUGAACUAGGGGUCUGGAGGCCUGGGUUUGAAUAUCGCCAGCCACUGAC
Get precursor sequence
|
Structure | 10 20 30 40 50
UUCACUAAGCGGAGACC--| C G - C U CGUGAU
CAA CCCAGGUCU CU GACUCCUAGU CAG GCU G
GUU GGGUCCGGA GG CUGGGGAUCA GUC CGG G
CAGUCACCGACCGCUAUAA^ U - U A C GUGAUC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
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Motifs | CNNC at 3p(+17) |
Tissue expression
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Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
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Star sequence |
Eca-Mir-345_5p* |
mirBase accession | MIMAT0013138 |
Sequence |
0- GCUGACUCCUAGUCCAGUGCU -21
Get sequence
|
Mature sequence |
Eca-Mir-345_3p |
mirBase accession | MIMAT0013139 |
Sequence |
37- CCCUGAACUAGGGGUCUGGAG -58
Get sequence
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