MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-345

Family name MIR-345 (all species)
Seed GCUGACC
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-345
Paralogues
Orthologues Bta-Mir-345  Cfa-Mir-345  Cja-Mir-345  Cpo-Mir-345  Dno-Mir-345  Eca-Mir-345  Ete-Mir-345  Hsa-Mir-345  Laf-Mir-345-P1  Laf-Mir-345-P2  Laf-Mir-345-P3  Mml-Mir-345  Mmr-Mir-345  Mmu-Mir-345-v1  Mmu-Mir-345-v2  Pab-Mir-345 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(rn6)		 chr6: 132748983-132749042 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUUCGUGAAGCCGACACCCAAGUCCAGGCCUGCUGACCCCUAGUCCAGUGCUUGUGGUGGCUACUGGGCCCUGAACUAGGGGUCUGGAGACCUGGGUUUGAUCUCCACAGGCUUUGCGUC
Get precursor sequence
Structure
        10          20        30         40        50         
CUUCGUGAAGCCGACACC--|  GU     C  G  -          C   U   UGUGGU 
                    CAA  CCAGG CU CU GACCCCUAGU CAG GCU      G
                    GUU  GGUCC GA GG CUGGGGAUCA GUC CGG      G
CUGCGUUUCGGACACCUCUA^  UG     A  -  U          A   C   GUCAUC 
.       110       100        90         80        70        60
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut -1 on both arms.
3' NTU Yes
MotifsUGUG in loop
Tissue expression
-   +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Mature sequence

Rno-Mir-345_5p
mirBase accessionMIMAT0000594
Sequence 
0- UGCUGACCCCUAGUCCAGUGCU -22
Get sequence
Proposed targets microrna.org: MIMAT0000594
TargetScanVert: rno-miR-345-5p
miRDB: MIMAT0000594
Co-mature sequence

Rno-Mir-345_3p
mirBase accessionMIMAT0004655
Sequence 
38- CCCUGAACUAGGGGUCUGGAGA -60
Get sequence
Proposed targets microrna.org: MIMAT0004655
TargetScanVert: rno-miR-345-3p
miRDB: MIMAT0004655