MirGeneDB ID | Ete-Mir-345 |
Family name |
MIR-345 (all species) |
Seed |
CUGACUC |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
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Paralogues |
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Orthologues |
Bta-Mir-345
Cfa-Mir-345
Cja-Mir-345
Cpo-Mir-345
Dno-Mir-345
Eca-Mir-345
Hsa-Mir-345
Laf-Mir-345-P1
Laf-Mir-345-P2
Laf-Mir-345-P3
Mml-Mir-345
Mmr-Mir-345
Mmu-Mir-345-v1
Mmu-Mir-345-v2
Pab-Mir-345
Rno-Mir-345
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (echTel2) |
JH980297: 83101738-83101795 [-]
UCSC
|
Precursor (pre-Mir +30nt flank) |
GUGAUGACCACGGGAACCAGGCCCAGGCCUGCUGACUCCUAGUCCAGUGCUCGUGAUGGGCAUAGGGCCCUGAACUAGGGGUCUGGAGGUCUGCGCUUGAAUAUCGACAAGUUCUUUU
Get precursor sequence
|
Structure | 10 20 30 40 50
GUGAUGACCACGGGAAC--| C G - C U GUGAU
CAGGC CAGGCCU CU GACUCCUAGU CAG GCUC G
GUUCG GUCUGGA GG CUGGGGAUCA GUC CGGG G
UUUUCUUGAACAGCUAUAA^ C - U A C AUACG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Drosha cut +1 on both arms. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Ete-Mir-345_5p |
mirBase accession | None |
Sequence |
0- GCUGACUCCUAGUCCAGUGCUC -22
Get sequence
|
Star sequence |
Ete-Mir-345_3p* |
mirBase accession | None |
Sequence |
36- GCCCUGAACUAGGGGUCUGGAG -58
Get sequence
|