MirGeneDB 3.0

MirGeneDB ID

Ete-Mir-345

Family name MIR-345 (all species)
Seed CUGACUC
Species Lesser hedgehog tenrec (Echinops telfairi)
MiRBase ID
Paralogues
Orthologues Bta-Mir-345  Cfa-Mir-345  Cja-Mir-345  Cpo-Mir-345  Dno-Mir-345  Eca-Mir-345  Hsa-Mir-345  Laf-Mir-345-P1  Laf-Mir-345-P2  Laf-Mir-345-P3  Mml-Mir-345  Mmr-Mir-345  Mmu-Mir-345-v1  Mmu-Mir-345-v2  Pab-Mir-345  Rno-Mir-345 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(echTel2)
JH980297: 83101738-83101795 [-] UCSC
Precursor
(pre-Mir +30nt flank)
GUGAUGACCACGGGAACCAGGCCCAGGCCUGCUGACUCCUAGUCCAGUGCUCGUGAUGGGCAUAGGGCCCUGAACUAGGGGUCUGGAGGUCUGCGCUUGAAUAUCGACAAGUUCUUUU
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Structure
        10          20        30         40        50        
GUGAUGACCACGGGAAC--|    C       G  -          C   U    GUGAU 
                   CAGGC CAGGCCU CU GACUCCUAGU CAG GCUC     G
                   GUUCG GUCUGGA GG CUGGGGAUCA GUC CGGG     G
UUUUCUUGAACAGCUAUAA^    C       -  U          A   C    AUACG 
      110       100        90         80        70        60
Deep sequencing
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CommentThere is a second Drosha cut +1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
To
Mature sequence

Ete-Mir-345_5p

mirBase accessionNone
Sequence
0- GCUGACUCCUAGUCCAGUGCUC -22
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Star sequence

Ete-Mir-345_3p*

mirBase accessionNone
Sequence
36- GCCCUGAACUAGGGGUCUGGAG -58
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