MirGeneDB ID | Ete-Mir-345 |
Family name |
MIR-345 (all species) |
Seed |
CUGACUC |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-345
Cfa-Mir-345
Cpo-Mir-345
Dno-Mir-345
Hsa-Mir-345
Mml-Mir-345
Mmu-Mir-345
Rno-Mir-345
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (echTel2) |
JH980297: 83101738-83101795 [-]
UCSC
|
Precursor (pre-Mir +30nt flank) |
GUGAUGACCACGGGAACCAGGCCCAGGCCUGCUGACUCCUAGUCCAGUGCUCGUGAUGGGCAUAGGGCCCUGAACUAGGGGUCUGGAGGUCUGCGCUUGAAUAUCGACAAGUUCUUUU
Get precursor sequence
|
Structure | 10 20 30 40 50
GUGAUGACCACGGGAAC--| C G - C U CGUGAU
CAGGC CAGGCCU CU GACUCCUAGU CAG GCU G
GUUCG GUCUGGA GG CUGGGGAUCA GUC CGG G
UUUUCUUGAACAGCUAUAA^ C - U A C GAUACG
110 100 90 80 70 60 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Ete-Mir-345_5p |
mirBase accession | None |
Sequence |
0- GCUGACUCCUAGUCCAGUGCU -21
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|
Star sequence |
Ete-Mir-345_3p* |
mirBase accession | None |
Sequence |
37- CCCUGAACUAGGGGUCUGGAG -58
Get sequence
|