MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-155

Family name MIR-155 (all species)
Seed UAAUGCU
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-155  Ami-Mir-155  Bta-Mir-155  Cfa-Mir-155  Cja-Mir-155  Cli-Mir-155  Cmi-Mir-155  Cpi-Mir-155  Cpo-Mir-155  Dno-Mir-155  Dre-Mir-155  Ebu-Mir-155  Eca-Mir-155  Ete-Mir-155  Gga-Mir-155  Gja-Mir-155  Gmo-Mir-155  Hsa-Mir-155  Laf-Mir-155  Lch-Mir-155  Mal-Mir-155  Mdo-Mir-155  Mml-Mir-155  Mmr-Mir-155  Mmu-Mir-155  Mun-Mir-155  Neu-Mir-155  Oan-Mir-155  Ocu-Mir-155  Pab-Mir-155  Pbv-Mir-155  Pma-Mir-155  Rno-Mir-155  Sha-Mir-155  Spt-Mir-155-P3  Spt-Mir-155-P4  Sto-Mir-155  Tgu-Mir-155  Tni-Mir-155  Xla-Mir-155-P1  Xla-Mir-155-P2  Xtr-Mir-155 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)		 LG14: 27550544-27550604 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UGACUCACAGUGGCAGACCUCAUCCCAGGGUUAAUGCUAAUCGUGAUAGGGGUUGUGCUCUGACAGGGACUCCUGCGGGUUAGCAUUAGCCCUGAGCUGGGGGGAAUCUCACAUGUCCCAG
Get precursor sequence
Structure
        10          20        30        40        50        60 
UGACUCACAGUGGCAGA--|    UCC                 G  A        GUGCUC 
                   CCUCA   CAGGGUUAAUGCUAAUC UG UAGGGGUU      \
                   GGGGU   GUCCCGAUUACGAUUGG GC GUCCUCAG      U
GACCCUGUACACUCUAAGG^    CGA                 -  -        GGACAG 
 .       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-155_5p
mirBase accessionNone
Sequence 
0- UUAAUGCUAAUCGUGAUAGGGGUU -24
Get sequence
Star sequence

Loc-Mir-155_3p*
mirBase accessionNone
Sequence 
39- CUCCUGCGGGUUAGCAUUAGCC -61
Get sequence