MirGeneDB ID | Ocu-Mir-155 |
Family name |
MIR-155 (all species) |
Seed |
UAAUGCU |
Species |
Rabbit (Oryctolagus cuniculus) |
MiRBase ID |
ocu-mir-155
|
Paralogues |
|
Orthologues |
Aca-Mir-155
Ami-Mir-155
Bta-Mir-155
Cfa-Mir-155
Cja-Mir-155
Cli-Mir-155
Cmi-Mir-155
Cpi-Mir-155
Cpo-Mir-155
Dno-Mir-155
Dre-Mir-155
Ebu-Mir-155
Eca-Mir-155
Ete-Mir-155
Gga-Mir-155
Gja-Mir-155
Gmo-Mir-155
Hsa-Mir-155
Laf-Mir-155
Lch-Mir-155
Loc-Mir-155
Mal-Mir-155
Mdo-Mir-155
Mml-Mir-155
Mmr-Mir-155
Mmu-Mir-155
Mun-Mir-155
Neu-Mir-155
Oan-Mir-155
Pab-Mir-155
Pbv-Mir-155
Pma-Mir-155
Rno-Mir-155
Sha-Mir-155
Spt-Mir-155-P3
Spt-Mir-155-P4
Sto-Mir-155
Tgu-Mir-155
Tni-Mir-155
Xla-Mir-155-P1
Xla-Mir-155-P2
Xtr-Mir-155
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (oryCun2_add) |
chr14: 154700617-154700677 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CACUGGAAGUCUGCUGUAGGCUGUAUGCUGUUAAUGCUAAUCGUGAUAGGGGUUUUUACCUCCAACUGACUCCUACAUGUUAGCAUUAACAGGGUAUGACGCCUCUUACUAGCUUUCACGU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CACUGGAAGUCUGCUGUA U--| G U A UUUACC
GGC GUAU CUGUUAAUGCUAA CGUG UAGGGGUU \
CCG UAUG GACAAUUACGAUU GUAC AUCCUCAG U
UGCACUUUCGAUCAUUCU CAG^ G - - UCAACC
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Ocu-Mir-155_5p |
mirBase accession | MIMAT0048273 |
Sequence |
0- UUAAUGCUAAUCGUGAUAGGGGUU -24
Get sequence
|
Star sequence |
Ocu-Mir-155_3p* |
mirBase accession | MIMAT0048274 |
Sequence |
39- CUCCUACAUGUUAGCAUUAACA -61
Get sequence
|