MirGeneDB ID | Mgi-Mir-315-v2 |
Family name |
MIR-315 (all species) |
Seed |
UUGAUUG |
Species |
Pacific oyster (Magallana gigas) |
MiRBase ID |
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Paralogues |
Mgi-Mir-315-v1
|
Orthologues |
Aae-Mir-315
Aga-Mir-315
Agr-Mir-315
Bge-Mir-315
Bko-Mir-315
Bpl-Mir-315
Cbr-Mir-315
Cel-Mir-315
Csc-Mir-315
Cte-Mir-315
Dan-Mir-315
Dlo-Mir-315
Dma-Mir-315
Dme-Mir-315
Dmo-Mir-315
Dpu-Mir-315
Dsi-Mir-315
Dya-Mir-315
Eba-Mir-315
Efe-Mir-315
Esc-Mir-315
Gpa-Mir-315
Gsp-Mir-315
Hru-Mir-315
Isc-Mir-315
Lan-Mir-315
Lgi-Mir-315
Lhy-Mir-315
Llo-Mir-315
Mom-Mir-315
Nag-Mir-315
Npo-Mir-315
Obi-Mir-315
Ofu-Mir-315
Ovu-Mir-315
Pau-Mir-315
Pca-Mir-315
Pcr-Mir-315
Pdu-Mir-315
Pfl-Mir-315
Pma-Mir-315
Pve-Mir-315
Rph-Mir-315
Sko-Mir-315
Sme-Mir-315
Sne-Mir-315
Snu-Mir-315
Tca-Mir-315
Tur-Mir-315
War-Mir-315
|
Node of Origin (locus) |
Nephrozoa
|
Node of Origin (family) |
Nephrozoa
|
Genome context (CGI_GCA_000297895.1) |
scaffold626: 79860-79919 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
ACGAGAAUAGUAAUAUAUGUCUCCUCACCUUUUGAUUGUUGCUCAGAAAGCCAUCUCUAAAAAGCGUGGCUAUCGAGCAACAAUCAAAGAUUGAAGGAGACUUGUUAACAGCAAAAUCAU
Get precursor sequence
|
Structure | 10 20 30 40 50
ACGAGAAUAGUAAUAUAU- -| CC A A UCUCUA
GUCUCC UCA UUUUGAUUGUUGCUC GA AGCCA \
CAGAGG AGU GAAACUAACAACGAG CU UCGGU A
UACUAAAACGACAAUUGUU A^ UA - A GCGAAA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
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A- |
D- |
D- |
F- |
L- |
Ea |
Eg |
Fe |
Gi |
Ha |
He |
Ju |
La |
Ma |
Ma |
Ma |
Pe |
Re |
Sp |
Um |
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Mature sequence |
Mgi-Mir-315-v2_5p |
mirBase accession | None |
Sequence |
0- UUUGAUUGUUGCUCAGAAAGCCA -23
Get sequence
|
Star sequence |
Mgi-Mir-315-v2_3p* |
mirBase accession | None |
Sequence |
38- GCUAUCGAGCAACAAUCAAAGA -60
Get sequence
|