MirGeneDB 2.1

MirGeneDB ID

Pma-Mir-315

Family name MIR-315 (all species)
Seed UUUGAUU
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-315
Paralogues
Orthologues Aae-Mir-315  Bge-Mir-315  Bpl-Mir-315  Cbr-Mir-315  Cel-Mir-315  Cgi-Mir-315-v1  Cgi-Mir-315-v2  Csc-Mir-315  Cte-Mir-315  Dan-Mir-315  Dma-Mir-315  Dme-Mir-315  Dmo-Mir-315  Dpu-Mir-315  Dsi-Mir-315  Dya-Mir-315  Efe-Mir-315  Esc-Mir-315  Isc-Mir-315  Lan-Mir-315  Lgi-Mir-315  Lpo-Mir-315-P3  Lpo-Mir-315-P4  Lpo-Mir-315-P5  Lpo-Mir-315-P6-v1  Lpo-Mir-315-P6-v2  Npo-Mir-315  Obi-Mir-315  Ovu-Mir-315  Pfl-Mir-315  Sko-Mir-315  Sme-Mir-315  Tca-Mir-315 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)
NC_046082.1: 2604184-2604244 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCGACCUCCGACCUGCCGCGUUGUUCCCGAUUUGAUUGUUGCUCAGAAAGCCGUGAAUUGAACGUCGACUUUCGGGCAUCAAUCAAAACGGGAGGCGCGGCCCAGCCAGCACAGGAGCCA
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Structure
        10            20        30        40        50        60
UGCGACCUCCGACCUGC----|    UG      A        U     A     C  UGAAU 
                     CGCGU  UUCCCG UUUGAUUG UGCUC GAAAG CG     U
                     GCGCG  GAGGGC AAACUAAC ACGGG CUUUC GC     G
ACCGAGGACACGACCGACCCG^    --      A        U     -     A  UGCAA 
 .       110       100          90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-315_5p

mirBase accessionMIMAT0019539
Sequence
0- AUUUGAUUGUUGCUCAGAAAGCCG -24
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Star sequence

Pma-Mir-315_3p* (predicted)

mirBase accessionNone
Sequence
39- CUUUCGGGCAUCAAUCAAAACG -61
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