MirGeneDB 2.1

MirGeneDB ID

Cel-Mir-315

Family name MIR-315 (all species)
Seed UUUGAUU
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-1820
Paralogues
Orthologues Aae-Mir-315  Bge-Mir-315  Bpl-Mir-315  Cbr-Mir-315  Cgi-Mir-315-v1  Cgi-Mir-315-v2  Csc-Mir-315  Cte-Mir-315  Dan-Mir-315  Dma-Mir-315  Dme-Mir-315  Dmo-Mir-315  Dpu-Mir-315  Dsi-Mir-315  Dya-Mir-315  Efe-Mir-315  Esc-Mir-315  Isc-Mir-315  Lan-Mir-315  Lgi-Mir-315  Lpo-Mir-315-P3  Lpo-Mir-315-P4  Lpo-Mir-315-P5  Lpo-Mir-315-P6-v1  Lpo-Mir-315-P6-v2  Npo-Mir-315  Obi-Mir-315  Ovu-Mir-315  Pfl-Mir-315  Pma-Mir-315  Sko-Mir-315  Sme-Mir-315  Tca-Mir-315 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(ce11)
chrIV: 7767483-7767548 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACGUAUUCUUCAAAAAUUGCAUUUUCCAUCUUUUGAUUGUUUUUCGAUGAUGUUCGUUAAAUCGGUAUAAGCGAACCAUUGUAAACAAUCAAAGAAUGGAGAAUCAAUUUAUGAUCUGGAAGAUGU
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Structure
        10           20        30        40        50        60    
ACGUAUUCUUCAAAAAU---| C         CU           UU     AU     UUAAAUC 
                    UG AUUUUCCAU  UUUGAUUGUUU  CGAUG  GUUCG       \
                    AC UAAGAGGUA  AAACUAACAAA  GUUAC  CAAGC       G
UGUAGAAGGUCUAGUAUUUA^ -         AG           U-     --     GAAUAUG 
    120       110        100        90         80          70
Deep sequencing
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CommentThere is a second Dicer cut +1 on both arms.
3' NTU No
MotifsNo
Tissue expression
 +
Wt Da Ea Mi Yo Yo
Mature sequence

Cel-Mir-315_5p

mirBase accessionMIMAT0006587
Sequence
0- UUUUGAUUGUUUUUCGAUGAUGUUCG -26
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Proposed targets microrna.org: MIMAT0006587
TargetScanWorm: cel-miR-1820
Star sequence

Cel-Mir-315_3p*

mirBase accessionMIMAT0020359
Sequence
43- AACCAUUGUAAACAAUCAAAGAA -66
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