MirGeneDB 3.0

MirGeneDB ID

Cel-Mir-315

Family name MIR-315 (all species)
Seed UUUGAUU
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-1820
Paralogues
Orthologues Aae-Mir-315  Aga-Mir-315  Agr-Mir-315  Ava-Mir-315-P7  Ava-Mir-315-P8  Bge-Mir-315  Bko-Mir-315  Bpl-Mir-315  Cbr-Mir-315  Csc-Mir-315  Cte-Mir-315  Dan-Mir-315  Dgr-Mir-315-P1  Dgr-Mir-315-P2  Dlo-Mir-315  Dma-Mir-315  Dme-Mir-315  Dmo-Mir-315  Dpu-Mir-315  Dsi-Mir-315  Dya-Mir-315  Eba-Mir-315  Efe-Mir-315  Esc-Mir-315  Gpa-Mir-315  Gsp-Mir-315  Hru-Mir-315  Isc-Mir-315  Lan-Mir-315  Lgi-Mir-315  Lhy-Mir-315  Llo-Mir-315  Lpo-Mir-315-P3  Lpo-Mir-315-P4  Lpo-Mir-315-P5  Lpo-Mir-315-P6-v1  Lpo-Mir-315-P6-v2  Mgi-Mir-315-v1  Mgi-Mir-315-v2  Mom-Mir-315  Nag-Mir-315  Npo-Mir-315  Obi-Mir-315  Ofu-Mir-315  Ovu-Mir-315  Pau-Mir-315  Pca-Mir-315  Pcr-Mir-315  Pdu-Mir-315  Pfl-Mir-315  Pma-Mir-315  Pve-Mir-315  Rph-Mir-315  Sko-Mir-315  Sme-Mir-315  Sne-Mir-315  Snu-Mir-315  Tca-Mir-315  Tur-Mir-315  War-Mir-315 
Node of Origin (locus) Bilateria
Node of Origin (family) Nephrozoa
Genome context
(ce11)
chrIV: 7767483-7767548 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACGUAUUCUUCAAAAAUUGCAUUUUCCAUCUUUUGAUUGUUUUUCGAUGAUGUUCGUUAAAUCGGUAUAAGCGAACCAUUGUAAACAAUCAAAGAAUGGAGAAUCAAUUUAUGAUCUGGAAGAUGU
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Structure
        10           20        30        40        50        60    
ACGUAUUCUUCAAAAAU---| C         CU           UU     AU     UUAAAUC 
                    UG AUUUUCCAU  UUUGAUUGUUU  CGAUG  GUUCG       \
                    AC UAAGAGGUA  AAACUAACAAA  GUUAC  CAAGC       G
UGUAGAAGGUCUAGUAUUUA^ -         AG           U-     --     GAAUAUG 
    120       110        100        90         80          70
Deep sequencing
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CommentThere is a second Dicer cut +1 on both arms.
3' NTU No
MotifsNo
Tissue expression
 +
Da Ea Mi Wi Yo Yo
Mature sequence

Cel-Mir-315_5p

mirBase accessionMIMAT0006587
Sequence
0- UUUUGAUUGUUUUUCGAUGAUGUUCG -26
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Proposed targets microrna.org: MIMAT0006587
TargetScanWorm: cel-miR-1820
Star sequence

Cel-Mir-315_3p*

mirBase accessionMIMAT0020359
Sequence
43- AACCAUUGUAAACAAUCAAAGAA -66
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