MirGeneDB 3.0
MirGeneDB ID

Pdu-Mir-315

Family name MIR-315 (all species)
Seed UUUGAUU
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues
Orthologues Aae-Mir-315  Aga-Mir-315  Agr-Mir-315  Ava-Mir-315-P7  Ava-Mir-315-P8  Bge-Mir-315  Bko-Mir-315  Bpl-Mir-315  Cbr-Mir-315  Cel-Mir-315  Csc-Mir-315  Cte-Mir-315  Dan-Mir-315  Dgr-Mir-315-P1  Dgr-Mir-315-P2  Dlo-Mir-315  Dma-Mir-315  Dme-Mir-315  Dmo-Mir-315  Dpu-Mir-315  Dsi-Mir-315  Dya-Mir-315  Eba-Mir-315  Efe-Mir-315  Esc-Mir-315  Gpa-Mir-315  Gsp-Mir-315  Hru-Mir-315  Isc-Mir-315  Lan-Mir-315  Lgi-Mir-315  Lhy-Mir-315  Llo-Mir-315  Lpo-Mir-315-P3  Lpo-Mir-315-P4  Lpo-Mir-315-P5  Lpo-Mir-315-P6-v1  Lpo-Mir-315-P6-v2  Mgi-Mir-315-v1  Mgi-Mir-315-v2  Mom-Mir-315  Nag-Mir-315  Npo-Mir-315  Obi-Mir-315  Ofu-Mir-315  Ovu-Mir-315  Pau-Mir-315  Pca-Mir-315  Pcr-Mir-315  Pfl-Mir-315  Pma-Mir-315  Pve-Mir-315  Rph-Mir-315  Sko-Mir-315  Sme-Mir-315  Sne-Mir-315  Snu-Mir-315  Tca-Mir-315  Tur-Mir-315  War-Mir-315 
Node of Origin (locus) Nephrozoa
Node of Origin (family) Nephrozoa
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)		 JAPTHN010000011.1: 16298119-16298178 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AGCAGGAACUCCAAGAAACGUUCGUUCAGAUUUUGAUUGUUGCUCAGAAAGCCGUUGUGACUGACUGGCUAUCGGGUAGUAAUCAAAAAAUGAUGAGGGCGUUGUUUCGUCUCAAACUUC
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Structure
        10         20         30        40        50          
AGCAGGAACUCCAAGAA-      GU-|  GA               A  A    GUUGUG 
                  ACGUUC   UCA  UUUUGAUUGUUGCUC GA AGCC      \
                  UGCGGG   AGU  AAAACUAAUGAUGGG CU UCGG      A
CUUCAAACUCUGCUUUGU      AGU^  AA               -  A    UCAGUC 
.       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Mature sequence

Pdu-Mir-315_5p
mirBase accessionNone
Sequence 
0- UUUUGAUUGUUGCUCAGAAAGCC -23
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Star sequence

Pdu-Mir-315_3p*
mirBase accessionNone
Sequence 
38- CUAUCGGGUAGUAAUCAAAAAA -60
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