MirGeneDB ID | Pdu-Mir-315 |
Family name |
MIR-315 (all species) |
Seed |
UUUGAUU |
Species |
Dumerils clam worm (Platynereis dumerilii) |
MiRBase ID |
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Paralogues |
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Orthologues |
Aae-Mir-315
Aga-Mir-315
Agr-Mir-315
Ava-Mir-315-P7
Ava-Mir-315-P8
Bge-Mir-315
Bko-Mir-315
Bpl-Mir-315
Cbr-Mir-315
Cel-Mir-315
Csc-Mir-315
Cte-Mir-315
Dan-Mir-315
Dgr-Mir-315-P1
Dgr-Mir-315-P2
Dlo-Mir-315
Dma-Mir-315
Dme-Mir-315
Dmo-Mir-315
Dpu-Mir-315
Dsi-Mir-315
Dya-Mir-315
Eba-Mir-315
Efe-Mir-315
Esc-Mir-315
Gpa-Mir-315
Gsp-Mir-315
Hru-Mir-315
Isc-Mir-315
Lan-Mir-315
Lgi-Mir-315
Lhy-Mir-315
Llo-Mir-315
Lpo-Mir-315-P3
Lpo-Mir-315-P4
Lpo-Mir-315-P5
Lpo-Mir-315-P6-v1
Lpo-Mir-315-P6-v2
Mgi-Mir-315-v1
Mgi-Mir-315-v2
Mom-Mir-315
Nag-Mir-315
Npo-Mir-315
Obi-Mir-315
Ofu-Mir-315
Ovu-Mir-315
Pau-Mir-315
Pca-Mir-315
Pcr-Mir-315
Pfl-Mir-315
Pma-Mir-315
Pve-Mir-315
Rph-Mir-315
Sko-Mir-315
Sme-Mir-315
Sne-Mir-315
Snu-Mir-315
Tca-Mir-315
Tur-Mir-315
War-Mir-315
|
Node of Origin (locus) |
Bilateria
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Node of Origin (family) |
Nephrozoa
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Genome context (GCA_026936325.1_EMBL_pdum_1.0) |
JAPTHN010000011.1: 16298119-16298178 [+]
Ensembl
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Precursor (pre-Mir +30nt flank) |
AGCAGGAACUCCAAGAAACGUUCGUUCAGAUUUUGAUUGUUGCUCAGAAAGCCGUUGUGACUGACUGGCUAUCGGGUAGUAAUCAAAAAAUGAUGAGGGCGUUGUUUCGUCUCAAACUUC
Get precursor sequence
|
Structure | 10 20 30 40 50
AGCAGGAACUCCAAGAA- GU-| GA A A GUUGUG
ACGUUC UCA UUUUGAUUGUUGCUC GA AGCC \
UGCGGG AGU AAAACUAAUGAUGGG CU UCGG A
CUUCAAACUCUGCUUUGU AGU^ AA - A UCAGUC
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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24 |
24 |
24 |
24 |
24 |
36 |
36 |
36 |
36 |
36 |
48 |
48 |
48 |
48 |
48 |
6d |
6d |
6d |
6d |
72 |
72 |
72 |
72 |
72 |
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Mature sequence |
Pdu-Mir-315_5p |
mirBase accession | None |
Sequence |
0- UUUUGAUUGUUGCUCAGAAAGCC -23
Get sequence
|
Star sequence |
Pdu-Mir-315_3p* |
mirBase accession | None |
Sequence |
38- CUAUCGGGUAGUAAUCAAAAAA -60
Get sequence
|