MirGeneDB 3.0

MirGeneDB ID

Dme-Mir-315

Family name MIR-315 (all species)
Seed UUUGAUU
Species Fruit fly (Drosophila melanogaster)
MiRBase ID dme-mir-315
Paralogues
Orthologues Aae-Mir-315  Aga-Mir-315  Agr-Mir-315  Ava-Mir-315-P7  Ava-Mir-315-P8  Bge-Mir-315  Bko-Mir-315  Bpl-Mir-315  Cbr-Mir-315  Cel-Mir-315  Csc-Mir-315  Cte-Mir-315  Dan-Mir-315  Dgr-Mir-315-P1  Dgr-Mir-315-P2  Dlo-Mir-315  Dma-Mir-315  Dmo-Mir-315  Dpu-Mir-315  Dsi-Mir-315  Dya-Mir-315  Eba-Mir-315  Efe-Mir-315  Esc-Mir-315  Gpa-Mir-315  Gsp-Mir-315  Hru-Mir-315  Isc-Mir-315  Lan-Mir-315  Lgi-Mir-315  Lhy-Mir-315  Llo-Mir-315  Lpo-Mir-315-P3  Lpo-Mir-315-P4  Lpo-Mir-315-P5  Lpo-Mir-315-P6-v1  Lpo-Mir-315-P6-v2  Mgi-Mir-315-v1  Mgi-Mir-315-v2  Mom-Mir-315  Nag-Mir-315  Npo-Mir-315  Obi-Mir-315  Ofu-Mir-315  Ovu-Mir-315  Pau-Mir-315  Pca-Mir-315  Pcr-Mir-315  Pdu-Mir-315  Pfl-Mir-315  Pma-Mir-315  Pve-Mir-315  Rph-Mir-315  Sko-Mir-315  Sme-Mir-315  Sne-Mir-315  Snu-Mir-315  Tca-Mir-315  Tur-Mir-315  War-Mir-315 
Node of Origin (locus) Bilateria
Node of Origin (family) Nephrozoa
Genome context
(Drosophila_melanogaster_BDGP6)
3L: 18860982-18861045 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUAAGAGUUCCUUCACGGACACUUAUAUAAUUUUGAUUGUUGCUCAGAAAGCCCUCAUUGUUUACCAGUUGGCUUUCGAGCAAUAAUUGAAACCAGAUAAGUGAUCCCCUCAACGCUGACGAUU
Get precursor sequence
Structure
        10          20        30        40        50        60  
AUAAGAGUUCCUUCACGGA--|      AUAA   UG          A       CUCAUUGU 
                     CACUUAU    UUU  AUUGUUGCUC GAAAGCC        \
                     GUGAAUA    AAA  UAAUAACGAG CUUUCGG        U
UUAGCAGUCGCAACUCCCCUA^      GACC   GU          -       UUGACCAU 
  120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bo He He La Ov Sa Wh
Mature sequence

Dme-Mir-315_5p

mirBase accessionMIMAT0000407
Sequence
0- UUUUGAUUGUUGCUCAGAAAGCC -23
Get sequence
Proposed targets microrna.org: MIMAT0000407
TargetScanFly: dme-miR-315
Star sequence

Dme-Mir-315_3p*

mirBase accessionMIMAT0020841
Sequence
42- CUUUCGAGCAAUAAUUGAAACC -64
Get sequence