Mir-315-P6-v1

MirGeneDB ID

Lpo-Mir-315-P6-v1

Family name

MIR-315 (all species)

Seed

UUUGAUU

Species

Atlantic horseshoe crab (Limulus polyphemus)

MiRBase ID

Paralogues

Lpo-Mir-315-P3 Lpo-Mir-315-P4 Lpo-Mir-315-P5 Lpo-Mir-315-P6-v2

Orthologues

Aae-Mir-315 Aga-Mir-315 Agr-Mir-315 Bge-Mir-315 Bko-Mir-315 Bpl-Mir-315 Cbr-Mir-315 Cel-Mir-315 Csc-Mir-315 Cte-Mir-315 Dan-Mir-315 Dlo-Mir-315 Dma-Mir-315 Dme-Mir-315 Dmo-Mir-315 Dpu-Mir-315 Dsi-Mir-315 Dya-Mir-315 Eba-Mir-315 Efe-Mir-315 Esc-Mir-315 Gpa-Mir-315 Gsp-Mir-315 Hru-Mir-315 Isc-Mir-315 Lan-Mir-315 Lgi-Mir-315 Lhy-Mir-315 Llo-Mir-315 Mom-Mir-315 Nag-Mir-315 Npo-Mir-315 Obi-Mir-315 Ofu-Mir-315 Ovu-Mir-315 Pau-Mir-315 Pca-Mir-315 Pcr-Mir-315 Pdu-Mir-315 Pfl-Mir-315 Pma-Mir-315 Pve-Mir-315 Rph-Mir-315 Sko-Mir-315 Sme-Mir-315 Sne-Mir-315 Snu-Mir-315 Tca-Mir-315 Tur-Mir-315 War-Mir-315

Node of Origin (locus)

L. polyphemus

Node of Origin (family)

Nephrozoa

Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)

NW_013673982.1: 2297-2354 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

CCUUAUUAAGAAAUACUUUGUCUUCUCGCCUUUUGAUUGUUGCUCAGAAUGCGUGGGUUUGUCAGGCUUUCGAGCAAUGAUCAAACGCUGAGGAGAUCUAGUUUCAUCCAGUACCAGC

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Structure

        10          20         30        40        50         
CCUUAUUAAGAAAUACUUU--        -| CU      UG      A   U  GUGGGU 
                     GUCUUCUC GC  UUUGAU  UUGCUC GAA GC      \
                     UAGAGGAG CG  AAACUA  AACGAG CUU CG      U
CGACCAUGACCUACUUUGAUC        U^ C-      GU      -   U  GACUGU 
      110       100        90         80         70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ge	Ge	So	So	So	To

Mature sequence

Lpo-Mir-315-P6-v1_5p

mirBase accession

None

Sequence

0- UUUUGAUUGUUGCUCAGAAUGCG -23

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Star sequence

Lpo-Mir-315-P6-v1_3p*

mirBase accession

None

Sequence

36- CUUUCGAGCAAUGAUCAAACGC -58

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