MirGeneDB ID | Dma-Mir-315 |
Family name |
MIR-315 (all species) |
Seed |
UUUGAUU |
Species |
Large common water flea (Daphnia magna) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Aae-Mir-315
Aga-Mir-315
Agr-Mir-315
Ava-Mir-315-P7
Ava-Mir-315-P8
Bge-Mir-315
Bko-Mir-315
Bpl-Mir-315
Cbr-Mir-315
Cel-Mir-315
Csc-Mir-315
Cte-Mir-315
Dan-Mir-315
Dgr-Mir-315-P1
Dgr-Mir-315-P2
Dlo-Mir-315
Dme-Mir-315
Dmo-Mir-315
Dpu-Mir-315
Dsi-Mir-315
Dya-Mir-315
Eba-Mir-315
Efe-Mir-315
Esc-Mir-315
Gpa-Mir-315
Gsp-Mir-315
Hru-Mir-315
Isc-Mir-315
Lan-Mir-315
Lgi-Mir-315
Lhy-Mir-315
Llo-Mir-315
Lpo-Mir-315-P3
Lpo-Mir-315-P4
Lpo-Mir-315-P5
Lpo-Mir-315-P6-v1
Lpo-Mir-315-P6-v2
Mgi-Mir-315-v1
Mgi-Mir-315-v2
Mom-Mir-315
Nag-Mir-315
Npo-Mir-315
Obi-Mir-315
Ofu-Mir-315
Ovu-Mir-315
Pau-Mir-315
Pca-Mir-315
Pcr-Mir-315
Pdu-Mir-315
Pfl-Mir-315
Pma-Mir-315
Pve-Mir-315
Rph-Mir-315
Sko-Mir-315
Sme-Mir-315
Sne-Mir-315
Snu-Mir-315
Tca-Mir-315
Tur-Mir-315
War-Mir-315
|
Node of Origin (locus) |
Nephrozoa
|
Node of Origin (family) |
Nephrozoa
|
Genome context (DMA_ASM399081) |
NC_046182.1: 7284560-7284654 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GCUGCAUUUUUCAAAAAUGGCUCCCAAUGUUUUUGAUUGUUGCUCAGAAAGCCGUGCCAUUUCGCUAUUGUUUGGCUGAACGCCGAAAACAUAUACAAACUGGCUUUCGAGAAAUAAUCAGAAUCACAAAAGGGCGAAGAAUCGACGUACAACUA
Get precursor sequence
|
Structure | 10 20 30 40 50 60 70
GCUGCAUUUUUCAAAAAUG- CCAA-| U G A GUGCCAUUUCGCUAUUGUUUGGC
GCUC UG UUUUGAUUGUU CUC GAAAGCC U
CGGG AC AAGACUAAUAA GAG CUUUCGG G
AUCAACAUGCAGCUAAGAAG AAAAC^ U A - UCAAACAUAUACAAAAGCCGCAA
150 140 130 120 110 100 90 80 |
Deep sequencing |
Go to detailed chart
|
Comment | The 5p arm is monouridylated at its 3' end. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
01 |
02 |
03 |
04 |
05 |
06 |
07 |
08 |
09 |
10 |
11 |
12 |
13 |
14 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Mature sequence |
Dma-Mir-315_5p |
mirBase accession | None |
Sequence |
0- UUUUGAUUGUUGCUCAGAAAGCC -23
Get sequence
|
Star sequence |
Dma-Mir-315_3p* |
mirBase accession | None |
Sequence |
73- CUUUCGAGAAAUAAUCAGAAUC -95
Get sequence
|