MirGeneDB ID | Dma-Mir-315 |
Family name |
MIR-315 (all species) |
Seed |
UUUGAUU |
Species |
Large common water flea (Daphnia magna) |
MiRBase ID |
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Paralogues |
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Orthologues |
Aae-Mir-315
Bge-Mir-315
Bpl-Mir-315
Cbr-Mir-315
Cel-Mir-315
Cgi-Mir-315-v1
Cgi-Mir-315-v2
Csc-Mir-315
Cte-Mir-315
Dan-Mir-315
Dme-Mir-315
Dmo-Mir-315
Dpu-Mir-315
Dsi-Mir-315
Dya-Mir-315
Efe-Mir-315
Esc-Mir-315
Isc-Mir-315
Lan-Mir-315
Lgi-Mir-315
Lpo-Mir-315-P3
Lpo-Mir-315-P4
Lpo-Mir-315-P5
Lpo-Mir-315-P6-v1
Lpo-Mir-315-P6-v2
Npo-Mir-315
Obi-Mir-315
Ovu-Mir-315
Pfl-Mir-315
Pma-Mir-315
Sko-Mir-315
Sme-Mir-315
Tca-Mir-315
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Node of Origin (locus) |
Bilateria
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Node of Origin (family) |
Bilateria
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Genome context (DMA_ASM399081) |
NC_046182.1: 7284560-7284654 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
GCUGCAUUUUUCAAAAAUGGCUCCCAAUGUUUUUGAUUGUUGCUCAGAAAGCCGUGCCAUUUCGCUAUUGUUUGGCUGAACGCCGAAAACAUAUACAAACUGGCUUUCGAGAAAUAAUCAGAAUCACAAAAGGGCGAAGAAUCGACGUACAACUA
Get precursor sequence
|
Structure | 10 20 30 40 50 60 70
GCUGCAUUUUUCAAAAAUG- CCAA-| U G A GUGCCAUUUCGCUAUUGUUUGGC
GCUC UG UUUUGAUUGUU CUC GAAAGCC U
CGGG AC AAGACUAAUAA GAG CUUUCGG G
AUCAACAUGCAGCUAAGAAG AAAAC^ U A - UCAAACAUAUACAAAAGCCGCAA
150 140 130 120 110 100 90 80 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
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Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
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Mature sequence |
Dma-Mir-315_5p |
mirBase accession | None |
Sequence |
0- UUUUGAUUGUUGCUCAGAAAGCC -23
Get sequence
|
Star sequence |
Dma-Mir-315_3p* |
mirBase accession | None |
Sequence |
73- CUUUCGAGAAAUAAUCAGAAUC -95
Get sequence
|