Mir-315

MirGeneDB ID

Dma-Mir-315

Family name

MIR-315 (all species)

Seed

UUUGAUU

Species

Large common water flea (Daphnia magna)

MiRBase ID

Paralogues

Orthologues

Aae-Mir-315 Aga-Mir-315 Agr-Mir-315 Ava-Mir-315-P7 Ava-Mir-315-P8 Bge-Mir-315 Bko-Mir-315 Bpl-Mir-315 Cbr-Mir-315 Cel-Mir-315 Csc-Mir-315 Cte-Mir-315 Dan-Mir-315 Dgr-Mir-315-P1 Dgr-Mir-315-P2 Dlo-Mir-315 Dme-Mir-315 Dmo-Mir-315 Dpu-Mir-315 Dsi-Mir-315 Dya-Mir-315 Eba-Mir-315 Efe-Mir-315 Esc-Mir-315 Gpa-Mir-315 Gsp-Mir-315 Hru-Mir-315 Isc-Mir-315 Lan-Mir-315 Lgi-Mir-315 Lhy-Mir-315 Llo-Mir-315 Lpo-Mir-315-P3 Lpo-Mir-315-P4 Lpo-Mir-315-P5 Lpo-Mir-315-P6-v1 Lpo-Mir-315-P6-v2 Mgi-Mir-315-v1 Mgi-Mir-315-v2 Mom-Mir-315 Nag-Mir-315 Npo-Mir-315 Obi-Mir-315 Ofu-Mir-315 Ovu-Mir-315 Pau-Mir-315 Pca-Mir-315 Pcr-Mir-315 Pdu-Mir-315 Pfl-Mir-315 Pma-Mir-315 Pve-Mir-315 Rph-Mir-315 Sko-Mir-315 Sme-Mir-315 Sne-Mir-315 Snu-Mir-315 Tca-Mir-315 Tur-Mir-315 War-Mir-315

Node of Origin (locus)

Bilateria

Node of Origin (family)

Nephrozoa

Genome context
(DMA_ASM399081)

NC_046182.1: 7284560-7284654 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

GCUGCAUUUUUCAAAAAUGGCUCCCAAUGUUUUUGAUUGUUGCUCAGAAAGCCGUGCCAUUUCGCUAUUGUUUGGCUGAACGCCGAAAACAUAUACAAACUGGCUUUCGAGAAAUAAUCAGAAUCACAAAAGGGCGAAGAAUCGACGUACAACUA

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Structure

        10         20         30        40        50        60        70       
GCUGCAUUUUUCAAAAAUG-    CCAA-| U           G   A       GUGCCAUUUCGCUAUUGUUUGGC 
                    GCUC     UG UUUUGAUUGUU CUC GAAAGCC                       U
                    CGGG     AC AAGACUAAUAA GAG CUUUCGG                       G
AUCAACAUGCAGCUAAGAAG    AAAAC^ U           A   -       UCAAACAUAUACAAAAGCCGCAA 
   150       140       130       120       110        100        90        80

Deep sequencing

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Comment

The 5p arm is monouridylated at its 3' end.

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

01	02	03	04	05	06	07	08	09	10	11	12	13	14

Mature sequence

Dma-Mir-315_5p

mirBase accession

None

Sequence

0- UUUUGAUUGUUGCUCAGAAAGCC -23

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Star sequence

Dma-Mir-315_3p*

mirBase accession

None

Sequence

73- CUUUCGAGAAAUAAUCAGAAUC -95

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