MirGeneDB 2.1
MirGeneDB ID

Sme-Mir-315

Family name MIR-315 (all species)
Seed UUUGAUU
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-315
Paralogues
Orthologues Aae-Mir-315  Bge-Mir-315  Bpl-Mir-315  Cbr-Mir-315  Cel-Mir-315  Cgi-Mir-315-v1  Cgi-Mir-315-v2  Csc-Mir-315  Cte-Mir-315  Dan-Mir-315  Dma-Mir-315  Dme-Mir-315  Dmo-Mir-315  Dpu-Mir-315  Dsi-Mir-315  Dya-Mir-315  Efe-Mir-315  Esc-Mir-315  Isc-Mir-315  Lan-Mir-315  Lgi-Mir-315  Lpo-Mir-315-P3  Lpo-Mir-315-P4  Lpo-Mir-315-P5  Lpo-Mir-315-P6-v1  Lpo-Mir-315-P6-v2  Npo-Mir-315  Obi-Mir-315  Ovu-Mir-315  Pfl-Mir-315  Pma-Mir-315  Sko-Mir-315  Tca-Mir-315 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000017_dd_Smes_g4_17: 5952889-5952952 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAUUGACACAGUUGAGCGAGGCUUAUAGAAUUUUGAUUGUUGCUCUGAGAGUUAAUAUAAUUUCAAUGAUAACUGUCUAACAACCAUCAAAUUUCAAAGCGAUGCUUGUCAUCGGGUCCCCGAA
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Structure
        10        20            30        40        50        60  
GAUUGACACAGUUGAGCGAG----|   AUA   U      U    CUCU  G    AAUAUAAU 
                        GCUU   GAA UUUGAU GUUG    GA AGUU        \
                        CGAA   CUU AAACUA CAAC    CU UCAA        U
AAGCCCCUGGGCUACUGUUCGUAG^   A--   U      C    AAU-  G    UAGUAACU 
  120       110       100          90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Se Se Se Se Se Se Se Se Se Se Se Se Ne Wh Wh Wh
Mature sequence

Sme-Mir-315_5p
mirBase accessionMIMAT0011282
Sequence 
0- UUUUGAUUGUUGCUCUGAGAGUU -23
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Star sequence

Sme-Mir-315_3p*
mirBase accessionMIMAT0012167
Sequence 
42- CUGUCUAACAACCAUCAAAUUU -64
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