MirGeneDB 3.0

MirGeneDB ID

Ocu-Mir-374-P1

Family name MIR-374 (all species)
Seed UAUAAUA
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-374a
Paralogues Ocu-Mir-374-P2 
Orthologues Bta-Mir-374-P1  Cfa-Mir-374-P1  Cja-Mir-374-P1  Cpo-Mir-374-P1  Dno-Mir-374-P1  Eca-Mir-374-P1  Hsa-Mir-374-P1  Mml-Mir-374-P1  Mmr-Mir-374-P1  Pab-Mir-374-P1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(oryCun2_add)
chrUn0059: 1527643-1527694 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-374-P1)
Mir-374-P1 chrUn0059: 1527643-1527694 [+] UCSC Ensembl
Mir-421-P1-v1 chrUn0059: 1527804-1527864 [+] UCSC Ensembl
Mir-421-P1-v2 chrUn0059: 1527805-1527863 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAGCCCCUGGAAAGCAAUUUACAUCGGCCAUUAUAAUACAACCUGAUAAGUGUUACAGCACUUACCAGAUUGUAUUGUAAUUGUCUGUGUAUAUGCCUGUCUGUCUUCCUGU
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Structure
        10          20        30        40        50     
CAGCCCCUGGAAAGCAAUU--|    C   C            C   A      UU 
                     UACAU GGC AUUAUAAUACAA CUG UAAGUG  A
                     AUGUG CUG UAAUGUUAUGUU GAC AUUCAC  C
UGUCCUUCUGUCUGUCCGUAU^    U   U            A   C      GA 
110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
He Ki Te To Wh
Mature sequence

Ocu-Mir-374-P1_5p

mirBase accessionMIMAT0048406
Sequence
0- UUAUAAUACAACCUGAUAAGUG -22
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Co-mature sequence

Ocu-Mir-374-P1_3p

mirBase accessionMIMAT0048407
Sequence
30- CUUACCAGAUUGUAUUGUAAUU -52
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