MirGeneDB 3.0
MirGeneDB ID

Ocu-Mir-421-P1-v2

Family name MIR-421 (all species)
Seed UCAACAA
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-545
Paralogues Ocu-Mir-421-P1-v1  Ocu-Mir-421-P2 
Orthologues Bta-Mir-421-P1-v1  Bta-Mir-421-P1-v2  Cfa-Mir-421-P1-v1  Cfa-Mir-421-P1-v2  Cpo-Mir-421-P1  Dno-Mir-421-P1-v1  Dno-Mir-421-P1-v2  Eca-Mir-421-P1-v1  Eca-Mir-421-P1-v2  Hsa-Mir-421-P1-v1  Hsa-Mir-421-P1-v2  Mml-Mir-421-P1-v1  Mml-Mir-421-P1-v2  Mmr-Mir-421-P1a  Mmr-Mir-421-P1b  Pab-Mir-421-P1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(oryCun2_add)		 chrUn0059: 1527805-1527863 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-421-P1-v2)		 Mir-374-P1 chrUn0059: 1527643-1527694 [+] UCSC Ensembl
Mir-421-P1-v1 chrUn0059: 1527804-1527864 [+] UCSC Ensembl
Mir-421-P1-v2 chrUn0059: 1527805-1527863 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCAGAGCCCAGCUUGGCACAUUAGUAGGCCUCAGUAAAUGUUUAUUGGAUGAAUAAAUGAGUGACUCAUCAACAAACAUUUAUUGCGUGCCUGCUAAAGUGAUCUCCACAGGCUCUGGA
Get precursor sequence
Structure
        10          20        30         40        50         
CCAGAGCCCAGCUUGGC--  A         CU-|           AUUG     AUAAAU 
                   AC UUAGUAGGC   CAGUAAAUGUUU    GAUGA      \
                   UG AAUCGUCCG   GUUAUUUACAAA    CUACU      G
AGGUCUCGGACACCUCUAG  A         UGC^           CAA-     CAGUGA 
       110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
He Ki Te To Wh
Star sequence

Ocu-Mir-421-P1-v2_5p*
mirBase accessionMIMAT0048527
Sequence 
0- UCAGUAAAUGUUUAUUGGAUGA -22
Get sequence
Mature sequence

Ocu-Mir-421-P1-v2_3p
mirBase accessionMIMAT0048528
Sequence 
37- AUCAACAAACAUUUAUUGCGUG -59
Get sequence