MirGeneDB 3.0
MirGeneDB ID

Cpo-Mir-421-P1

Family name MIR-421 (all species)
Seed CACAGUA
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-545
Paralogues
Orthologues Bta-Mir-421-P1-v1  Bta-Mir-421-P1-v2  Cfa-Mir-421-P1-v1  Cfa-Mir-421-P1-v2  Dno-Mir-421-P1-v1  Dno-Mir-421-P1-v2  Eca-Mir-421-P1-v1  Eca-Mir-421-P1-v2  Hsa-Mir-421-P1-v1  Hsa-Mir-421-P1-v2  Mml-Mir-421-P1-v1  Mml-Mir-421-P1-v2  Mmr-Mir-421-P1a  Mmr-Mir-421-P1b  Ocu-Mir-421-P1-v1  Ocu-Mir-421-P1-v2  Pab-Mir-421-P1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(cavPor3)		 scaffold_26: 22993124-22993186 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-421-P1)		 Mir-374-P1 scaffold_26: 22992971-22993022 [+] UCSC
Mir-421-P1 scaffold_26: 22993124-22993186 [+] UCSC
Precursor
(pre-Mir +30nt flank)
UGCUAGAGCUCAGCCUGGCACAUUAGUAGGCCACAGUACAUGUUUAUUGGAUGAAUAAAUGAAUGAGUCAUCAACAGACAUUUAUUGUGUGCUUGCUAAAGUGAUCUCCACAGGCCCUGGACU
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Structure
        10          20        30         40        50        60 
UGCUAGAGCUCAGCCUGG--   A         -|      C      AUUG    AAUAAAU 
                    CAC UUAGUAGGC CACAGUA AUGUUU    GAUG       \
                    GUG AAUCGUUCG GUGUUAU UACAGA    CUAC       G
UCAGGUCCCGGACACCUCUA   A         U^      U      CAA-    UGAGUAA 
 120       110       100        90        80         70
Deep sequencing
3' NTU Unknown
MotifsNo
Tissue expression
-   +
Sr Sr Sr Sr Sr Sr Sr Sr Sr To
Mature sequence

Cpo-Mir-421-P1_5p
mirBase accessionMIMAT0047345
Sequence 
0- CCACAGUACAUGUUUAUUGGAUG -23
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Star sequence

Cpo-Mir-421-P1_3p* (predicted)
mirBase accessionMIMAT0047346
Sequence 
40- UCAACAGACAUUUAUUGUGUGCU -63
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