Mir-421-P1-v1

MirGeneDB ID

Hsa-Mir-421-P1-v1

Family name

MIR-421 (all species)

Seed

CUCAGUA

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-545

Paralogues

Hsa-Mir-421-P1-v2 Hsa-Mir-421-P2

Orthologues

Bta-Mir-421-P1-v1 Bta-Mir-421-P1-v2 Cfa-Mir-421-P1-v1 Cfa-Mir-421-P1-v2 Cpo-Mir-421-P1 Dno-Mir-421-P1-v1 Dno-Mir-421-P1-v2 Eca-Mir-421-P1-v1 Eca-Mir-421-P1-v2 Mml-Mir-421-P1-v1 Mml-Mir-421-P1-v2 Mmr-Mir-421-P1a Mmr-Mir-421-P1b Ocu-Mir-421-P1-v1 Ocu-Mir-421-P1-v2 Pab-Mir-421-P1

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(hg38)

chrX: 74287125-74287187 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-421-P1-v1)

Mir-421-P1-v1 chrX: 74287125-74287187 [-] UCSC Ensembl
Mir-421-P1-v2 chrX: 74287126-74287185 [-] UCSC Ensembl
Mir-374-P1 chrX: 74287295-74287346 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUCCAGAGCCCAGCCUGGCACAUUAGUAGGCCUCAGUAAAUGUUUAUUAGAUGAAUAAAUGAAUGACUCAUCAGCAAACAUUUAUUGUGUGCCUGCUAAAGUGAGCUCCACAGGCUCUGGAUU

Get precursor sequence

Structure

        10          20        30         40        50        60 
CUCCAGAGCCCAGCCUGG--   A         CU-|           A  A    AAUAAAU 
                    CAC UUAGUAGGC   CAGUAAAUGUUU UU GAUG       \
                    GUG AAUCGUCCG   GUUAUUUACAAA GA CUAC       G
UUAGGUCUCGGACACCUCGA   A         UGU^           C  -    UCAGUAA 
 120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Mature sequence

Hsa-Mir-421-P1-v1_5p

mirBase accession

MIMAT0004785

Sequence

0- CCUCAGUAAAUGUUUAUUAGAUG -23

Get sequence

Proposed targets

microrna.org: MIMAT0004785
TargetScanVert: hsa-miR-545-5p
TargetMiner: hsa-miR-545-5p
miRDB: MIMAT0004785

Star sequence

Hsa-Mir-421-P1-v1_3p*

mirBase accession

MIMAT0003165

Sequence

40- UCAGCAAACAUUUAUUGUGUGCC -63

Get sequence

Proposed targets

microrna.org: MIMAT0003165
TargetScanVert: hsa-miR-545-3p
TargetMiner: hsa-miR-545-3p
miRDB: MIMAT0003165