MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-421-P1-v1

Family name MIR-421 (all species)
Seed CAACAAA
Species Horse (Equus caballus)
MiRBase ID eca-mir-545
Paralogues Eca-Mir-421-P1-v2  Eca-Mir-421-P2 
Orthologues Bta-Mir-421-P1-v1  Bta-Mir-421-P1-v2  Cfa-Mir-421-P1-v1  Cfa-Mir-421-P1-v2  Cpo-Mir-421-P1  Dno-Mir-421-P1-v1  Dno-Mir-421-P1-v2  Hsa-Mir-421-P1-v1  Hsa-Mir-421-P1-v2  Mml-Mir-421-P1-v1  Mml-Mir-421-P1-v2  Mmr-Mir-421-P1a  Mmr-Mir-421-P1b  Ocu-Mir-421-P1-v1  Ocu-Mir-421-P1-v2  Pab-Mir-421-P1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009179.1: 58620605-58620667 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-421-P1-v1)		 Mir-421-P1-v1 CM009179.1: 58620605-58620667 [-] UCSC Ensembl
Mir-421-P1-v2 CM009179.1: 58620606-58620665 [-] UCSC Ensembl
Mir-374-P1 CM009179.1: 58620777-58620828 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUCCAGAGCCCAGCCUGGCACAUUAGUAGGCCUCAGUAAAUGUUUAUUGGAUGAAUAAAUGAAUGACUCAUCAACAAACAUUUAUUGUGUGCCUGCUAACGUGAUCUCCACAGGCUCUGGACU
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Structure
        10          20        30         40        50        60 
CUCCAGAGCCCAGCCUGG--   A         CU-|           AUUG    AAUAAAU 
                    CAC UUAGUAGGC   CAGUAAAUGUUU    GAUG       \
                    GUG AAUCGUCCG   GUUAUUUACAAA    CUAC       G
UCAGGUCUCGGACACCUCUA   C         UGU^           CAA-    UCAGUAA 
 120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-421-P1-v1_5p*
mirBase accessionNone
Sequence 
0- CCUCAGUAAAUGUUUAUUGGAUG -23
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Mature sequence

Eca-Mir-421-P1-v1_3p
mirBase accessionMIMAT0013239
Sequence 
40- UCAACAAACAUUUAUUGUGUGCC -63
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