MirGeneDB ID | Pab-Mir-421-P1 |
---|---|
Family name | MIR-421 (all species) |
Seed | CUCAGUA |
Species | Sumatran orangutan (Pongo abelii) |
MiRBase ID | |
Paralogues | Pab-Mir-421-P2 |
Orthologues | Bta-Mir-421-P1-v1 Bta-Mir-421-P1-v2 Cfa-Mir-421-P1-v1 Cfa-Mir-421-P1-v2 Cpo-Mir-421-P1 Dno-Mir-421-P1-v1 Dno-Mir-421-P1-v2 Eca-Mir-421-P1-v1 Eca-Mir-421-P1-v2 Hsa-Mir-421-P1-v1 Hsa-Mir-421-P1-v2 Mml-Mir-421-P1-v1 Mml-Mir-421-P1-v2 Mmr-Mir-421-P1a Mmr-Mir-421-P1b Ocu-Mir-421-P1-v1 Ocu-Mir-421-P1-v2 |
Node of Origin (locus) | Eutheria |
Node of Origin (family) | Eutheria |
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054702.2: 79203820-79203882 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | CUCCAGAGCCCAGCCUGGCACAUUAGUAGGCCUCAGUAAAUGUUUAUUAGAUGAAUAAAUGAAUGACUCAUCAGCAAACAUUUAUUGUGUGCCUGCUAAAGUGAGCUCCACAGGCUCUGGAUUGet precursor sequence |
Structure | 10 20 30 40 50 60 CUCCAGAGCCCAGCCUGG-- A CU-| A A AAUAAAU CAC UUAGUAGGC CAGUAAAUGUUU UU GAUG \ GUG AAUCGUCCG GUUAUUUACAAA GA CUAC G UUAGGUCUCGGACACCUCGA A UGU^ C - UCAGUAA 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | No |
Mature sequence | Pab-Mir-421-P1_5p (predicted) |
mirBase accession | None |
Sequence |
0- CCUCAGUAAAUGUUUAUUAGAUG -23
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|
Star sequence | Pab-Mir-421-P1_3p* (predicted) |
mirBase accession | None |
Sequence |
40- UCAGCAAACAUUUAUUGUGUGCC -63
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