| MirGeneDB ID | Bta-Mir-421-P1-v2 |
|---|---|
| Family name | MIR-421 (all species) |
| Seed | CAGUAAA |
| Species | Cow (Bos taurus) |
| MiRBase ID | bta-mir-545 |
| Paralogues | Bta-Mir-421-P1-v1 Bta-Mir-421-P2 |
| Orthologues | Cfa-Mir-421-P1-v1 Cfa-Mir-421-P1-v2 Cpo-Mir-421-P1 Dno-Mir-421-P1-v1 Dno-Mir-421-P1-v2 Eca-Mir-421-P1-v1 Eca-Mir-421-P1-v2 Hsa-Mir-421-P1-v1 Hsa-Mir-421-P1-v2 Mml-Mir-421-P1-v1 Mml-Mir-421-P1-v2 Mmr-Mir-421-P1a Mmr-Mir-421-P1b Ocu-Mir-421-P1-v1 Ocu-Mir-421-P1-v2 Pab-Mir-421-P1 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037357.1: 76853222-76853281 [+] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-421-P1-v2) |
Mir-374-P1
NC_037357.1: 76853059-76853110 [+]
UCSC
Ensembl
Mir-421-P1-v1 NC_037357.1: 76853220-76853282 [+] UCSC Ensembl Mir-421-P1-v2 NC_037357.1: 76853222-76853281 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CCAGAGCCCAGCCUGGCACAUUCGUAGGCCUCAGUAAAUGUUUAUUGGAUGAAUAAAUGAAUGGCUCAUCAACAAACAUUUAUUGUGUGCCUGCUAACGUGAUCUCCACAGGCUCUGAACGet precursor sequence |
| Structure | 10 20 30 40 50 CCAGAGCCCAGCCUGGCACAUUC--- CU-| AUUG AUAAAU GUAGGC CAGUAAAUGUUU GAUGA \ CGUCCG GUUAUUUACAAA CUACU G CAAGUCUCGGACACCUCUAGUGCAAU UGU^ CAA- CGGUAA . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Bta-Mir-421-P1-v2_5p |
| mirBase accession | MIMAT0003806 |
| Sequence |
0- UCAGUAAAUGUUUAUUGGAUGA -22
Get sequence
|
| Proposed targets |
TargetScanVert: bta-miR-545-5p |
| Star sequence | Bta-Mir-421-P1-v2_3p* |
| mirBase accession | MIMAT0003807 |
| Sequence |
37- AUCAACAAACAUUUAUUGUGUGC -60
Get sequence
|
| Proposed targets |
TargetScanVert: bta-miR-545-3p |
