MirGeneDB ID | Bta-Mir-421-P2 |
---|---|
Family name | MIR-421 (all species) |
Seed | UCAACAG |
Species | Cow (Bos taurus) |
MiRBase ID | bta-mir-421 |
Paralogues | Bta-Mir-421-P1-v1 Bta-Mir-421-P1-v2 |
Orthologues | Cfa-Mir-421-P2 Cja-Mir-421-P2 Eca-Mir-421-P2 Hsa-Mir-421-P2 Laf-Mir-421-P2 Mml-Mir-421-P2 Mmu-Mir-421-P2 Ocu-Mir-421-P2 Pab-Mir-421-P2 Rno-Mir-421-P2 |
Node of Origin (locus) | Eutheria |
Node of Origin (family) | Eutheria |
Genome context (GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037357.1: 76925588-76925644 [+] UCSC Ensembl |
Clustered miRNAs (< 50kb from Mir-421-P2) |
Mir-374-P2
NC_037357.1: 76925428-76925479 [+]
UCSC
Ensembl
Mir-421-P2 NC_037357.1: 76925588-76925644 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | GCAGUGCCUAAUCCGGUGCACAUUGUAGGCCUCAUUAAAUGUUUGUUGAAUGAAAAAAUGAAUCAUCAACAGACAUUAAUUGGGCGCCUGCUCUGUGAUCUCCAUGGGCUCAUCUUGGet precursor sequence |
Structure | 10 20 30 40 50 GCAGUGCCUAAUCCGGUG-- UU -| UUA A AAAA CACA GUAGGC CUCA AAUGUUUGUUGA UGA \ GUGU CGUCCG GGGU UUACAGACAACU ACU A GUUCUACUCGGGUACCUCUA CU C^ UAA - AAGU 110 100 90 80 70 60 |
Deep sequencing | |
Comment | There is a second Drosha cut -1 on the 3p arm that is monouridylated at the 3' end. |
3' NTU | No |
Motifs | UG at 5p(-14) |
Star sequence | Bta-Mir-421-P2_5p* |
mirBase accession | None |
Sequence |
0- CUCAUUAAAUGUUUGUUGAAUGA -23
Get sequence
|
Mature sequence | Bta-Mir-421-P2_3p |
mirBase accession | MIMAT0009314 |
Sequence |
34- AUCAACAGACAUUAAUUGGGCGC -57
Get sequence
|
Proposed targets |
TargetScanVert: bta-miR-421 |