MirGeneDB 3.0
MirGeneDB ID

Ocu-Mir-421-P1-v1

Family name MIR-421 (all species)
Seed UCAGUAA
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-545
Paralogues Ocu-Mir-421-P1-v2  Ocu-Mir-421-P2 
Orthologues Bta-Mir-421-P1-v1  Bta-Mir-421-P1-v2  Cfa-Mir-421-P1-v1  Cfa-Mir-421-P1-v2  Cpo-Mir-421-P1  Dno-Mir-421-P1-v1  Dno-Mir-421-P1-v2  Eca-Mir-421-P1-v1  Eca-Mir-421-P1-v2  Hsa-Mir-421-P1-v1  Hsa-Mir-421-P1-v2  Mml-Mir-421-P1-v1  Mml-Mir-421-P1-v2  Mmr-Mir-421-P1a  Mmr-Mir-421-P1b  Pab-Mir-421-P1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(oryCun2_add)		 chrUn0059: 1527804-1527864 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-421-P1-v1)		 Mir-374-P1 chrUn0059: 1527643-1527694 [+] UCSC Ensembl
Mir-421-P1-v1 chrUn0059: 1527804-1527864 [+] UCSC Ensembl
Mir-421-P1-v2 chrUn0059: 1527805-1527863 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCCAGAGCCCAGCUUGGCACAUUAGUAGGCCUCAGUAAAUGUUUAUUGGAUGAAUAAAUGAGUGACUCAUCAACAAACAUUUAUUGCGUGCCUGCUAAAGUGAUCUCCACAGGCUCUGGAC
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Structure
        10          20        30         40        50          
UCCAGAGCCCAGCUUGG--   A         CU-|           AUUG    AAUAAAU 
                   CAC UUAGUAGGC   CAGUAAAUGUUU    GAUG       \
                   GUG AAUCGUCCG   GUUAUUUACAAA    CUAC       G
CAGGUCUCGGACACCUCUA   A         UGC^           CAA-    UCAGUGA 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
He Ki Te To Wh
Mature sequence

Ocu-Mir-421-P1-v1_5p
mirBase accessionMIMAT0048527
Sequence 
0- CUCAGUAAAUGUUUAUUGGAUG -22
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Star sequence

Ocu-Mir-421-P1-v1_3p*
mirBase accessionMIMAT0048528
Sequence 
39- UCAACAAACAUUUAUUGCGUGC -61
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