MirGeneDB ID | Ocu-Mir-582 |
Family name |
MIR-582 (all species) |
Seed |
AACCGGC |
Species |
Rabbit (Oryctolagus cuniculus) |
MiRBase ID |
ocu-mir-582
|
Paralogues |
|
Orthologues |
Bta-Mir-582-v1
Bta-Mir-582-v2
Cfa-Mir-582-v1
Cfa-Mir-582-v2
Cja-Mir-582
Cpo-Mir-582-v1
Cpo-Mir-582-v2
Dno-Mir-582-v1
Dno-Mir-582-v2
Eca-Mir-582
Hsa-Mir-582-v1
Hsa-Mir-582-v2
Laf-Mir-582-v1
Laf-Mir-582-v2
Mml-Mir-582-v1
Mml-Mir-582-v2
Mmr-Mir-582-v1
Mmr-Mir-582-v2
Mmu-Mir-582-v1
Mmu-Mir-582-v2
Pab-Mir-582-v1
Pab-Mir-582-v2
Rno-Mir-582-v1
Rno-Mir-582-v2
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (oryCun2_add) |
chr11: 75636026-75636085 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CACCUCACCACGGCAAUCUGUACUCUUUGGUUACAGUUGUUCAACCAGUUACUAAUCUAACUAAGUGUAACCGGCUAAACAACUGAACCCAAAGGGUGCAAAGUGAGAACAUUUCAUUGA
Get precursor sequence
|
Structure | 10 20 30 40 50
CACCUCACCACGGCAAUC--| UUA CAA A UAAUCU
UGUACUCUUUGG CAGUUGUU CC GUUAC A
ACGUGGGAAACC GUCAACAA GG CAAUG A
AGUUACUUUACAAGAGUGAA^ CAA AUC C UGAAUC
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Ocu-Mir-582_5p* |
mirBase accession | MIMAT0048533 |
Sequence |
0- UUACAGUUGUUCAACCAGUUACU -23
Get sequence
|
Mature sequence |
Ocu-Mir-582_3p |
mirBase accession | MIMAT0048534 |
Sequence |
37- UAACCGGCUAAACAACUGAACCC -60
Get sequence
|