MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-489-P1-v2

Family name MIR-489 (all species)
Seed GACAUCA
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-489-P1-v1  Xla-Mir-489-P2-v1  Xla-Mir-489-P2-v2 
Orthologues Cfa-Mir-489  Cja-Mir-489  Dno-Mir-489  Eca-Mir-489  Gja-Mir-489  Laf-Mir-489  Lch-Mir-489  Mmr-Mir-489  Mmu-Mir-489  Mun-Mir-489  Ocu-Mir-489  Pab-Mir-489  Pbv-Mir-489  Rno-Mir-489  Sha-Mir-489  Spt-Mir-489 
Node of Origin (locus) X. laevis
Node of Origin (family) Osteichthyes
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030734.1: 29791979-29792040 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCGCCGAGACAAUAAUCGUGGUGGCUUAGUGGUCGUAUGUAUGACGUCAUUUGCUUGAUUAUUUAGGAGUGACAUCAUAUGUACGGCUGCUAAACUGCUGCAUGAUACGUCUGUCAUGGAA
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Structure
        10          20        30        40        50        60
UGCGCCGAGACAAUAAUC--|UG UG C    UG             C      UGCUUGA 
                    G  G  G UUAG  GUCGUAUGUAUGA GUCAUU       U
                    C  C  C AAUC  CGGCAUGUAUACU CAGUGA       U
AAGGUACUGUCUGCAUAGUA^GU GU A    GU             A      GGAUUUA 
120       110       100        90        80        70
Deep sequencing
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Em
Star sequence

Xla-Mir-489-P1-v2_5p*
mirBase accessionNone
Sequence 
0- UGGUCGUAUGUAUGACGUCAUU -22
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Mature sequence

Xla-Mir-489-P1-v2_3p
mirBase accessionNone
Sequence 
40- UGACAUCAUAUGUACGGCUGCU -62
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