MirGeneDB 3.0
MirGeneDB ID

Sha-Mir-489

Family name MIR-489 (all species)
Seed UGACAUC
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues
Orthologues Aca-Mir-489-v1  Aca-Mir-489-v2  Ami-Mir-489-v1  Ami-Mir-489-v2  Bta-Mir-489-v1  Bta-Mir-489-v2  Bta-Mir-489-v3  Cfa-Mir-489  Cja-Mir-489  Cli-Mir-489-v1  Cli-Mir-489-v2  Cpi-Mir-489-v1  Cpi-Mir-489-v2  Dno-Mir-489  Dre-Mir-489-v1  Dre-Mir-489-v2  Eca-Mir-489  Gga-Mir-489-v1  Gga-Mir-489-v2  Gja-Mir-489  Gmo-Mir-489-v1  Gmo-Mir-489-v2  Hsa-Mir-489-v1  Hsa-Mir-489-v2  Laf-Mir-489  Lch-Mir-489  Loc-Mir-489-v1  Loc-Mir-489-v2  Mal-Mir-489-v1  Mal-Mir-489-v2  Mml-Mir-489-v1  Mml-Mir-489-v2  Mmr-Mir-489  Mmu-Mir-489  Mun-Mir-489  Ocu-Mir-489  Pab-Mir-489  Pbv-Mir-489  Rno-Mir-489  Spt-Mir-489  Tgu-Mir-489-v1  Tgu-Mir-489-v2  Tni-Mir-489-v1  Tni-Mir-489-v2  Xla-Mir-489-P1-v1  Xla-Mir-489-P1-v2  Xla-Mir-489-P2-v1  Xla-Mir-489-P2-v2  Xtr-Mir-489-v1  Xtr-Mir-489-v2 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(DEVIL_add)		 1: 137-196 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCCUGCACGGCAGCCAGGCAGUGGCUUGGCGGUCAUAGGCGUGAUAUCAUUGGCUGGAGCUCUGGGGAAUGACAUCAUGCGUAUGGCUGCUAAACUGCCACAUGGGACACUGCAGAGGGG
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Structure
        10        20           30        40        50         
CCCUGCACGGCAGCCAGGCA     ---|           G       A     GGCUGGA 
                    GUGGC   UUGGCGGUCAUA GCGUGAU UCAUU       G
                    CACCG   AAUCGUCGGUAU CGUACUA AGUAA       C
GGGGAGACGUCACAGGGUA-     UCA^           G       C     GGGGUCU 
.       110        100        90        80        70        60
Deep sequencing
3' NTU No
MotifsNo
Tissue expression
-   +
Bo Br He Ki Li Ly Pa Sk Sp Te
Star sequence

Sha-Mir-489_5p* (predicted)
mirBase accessionNone
Sequence 
0- GGUCAUAGGCGUGAUAUCAUUG -22
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Mature sequence

Sha-Mir-489_3p (predicted)
mirBase accessionNone
Sequence 
38- AUGACAUCAUGCGUAUGGCUGC -60
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