MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-489-v1

Family name MIR-489 (all species)
Seed UGACAUC
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-489
Paralogues Tni-Mir-489-v2 
Orthologues Aca-Mir-489-v1  Ami-Mir-489-v1  Bta-Mir-489-v1  Cfa-Mir-489  Cja-Mir-489  Cli-Mir-489-v1  Cpi-Mir-489-v1  Dno-Mir-489  Dre-Mir-489-v1  Eca-Mir-489  Gga-Mir-489-v1  Gja-Mir-489  Gmo-Mir-489-v1  Hsa-Mir-489-v1  Laf-Mir-489  Lch-Mir-489  Loc-Mir-489-v1  Mal-Mir-489-v1  Mml-Mir-489-v1  Mmr-Mir-489  Mmu-Mir-489  Mun-Mir-489  Ocu-Mir-489  Pab-Mir-489  Pbv-Mir-489  Rno-Mir-489  Sha-Mir-489  Spt-Mir-489  Tgu-Mir-489-v1  Xtr-Mir-489-v1 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 21_random: 1370454-1370512 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-489-v1)		 Mir-489-v2 21_random: 1370453-1370513 [+] UCSC Ensembl
Mir-489-v1 21_random: 1370454-1370512 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCCAUCCUCCCAUACUGGUGGUGGCCUGGUGGUCGUAUGCAUGACGUCAUUUACUUCGAUGAUUGGAGUGACAUCAUAUGUACGGCUGCUAAACCGCUACAAGAGACUUCUGCAGUGCU
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Structure
        10          20        30        40        50         
CCCAUCCUCCCAUACUG--|      CC   UG       GC    C       ACUUCG 
                   GUGGUGG  UGG  GUCGUAU  AUGA GUCAUUU      \
                   CAUCGCC  AUC  CGGCAUG  UACU CAGUGAG      A
UCGUGACGUCUUCAGAGAA^      AA   GU       UA    A       GUUAGU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Sp Sp Sp To
Star sequence

Tni-Mir-489-v1_5p*
mirBase accessionNone
Sequence 
0- GGUCGUAUGCAUGACGUCAUUU -22
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Mature sequence

Tni-Mir-489-v1_3p
mirBase accessionMIMAT0002939
Sequence 
37- GUGACAUCAUAUGUACGGCUGC -59
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