| MirGeneDB ID | Spt-Mir-489 |
|---|---|
| Family name | MIR-489 (all species) |
| Seed | UGACAUC |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aca-Mir-489-v1 Aca-Mir-489-v2 Ami-Mir-489-v1 Ami-Mir-489-v2 Bta-Mir-489-v1 Bta-Mir-489-v2 Bta-Mir-489-v3 Cfa-Mir-489 Cli-Mir-489-v1 Cli-Mir-489-v2 Cpi-Mir-489-v1 Cpi-Mir-489-v2 Dno-Mir-489 Dre-Mir-489-v1 Dre-Mir-489-v2 Gga-Mir-489-v1 Gga-Mir-489-v2 Gja-Mir-489 Gmo-Mir-489-v1 Gmo-Mir-489-v2 Hsa-Mir-489-v1 Hsa-Mir-489-v2 Lch-Mir-489 Loc-Mir-489-v1 Loc-Mir-489-v2 Mal-Mir-489-v1 Mal-Mir-489-v2 Mml-Mir-489-v1 Mml-Mir-489-v2 Mmu-Mir-489 Mun-Mir-489 Ocu-Mir-489 Pbv-Mir-489 Rno-Mir-489 Sha-Mir-489 Tgu-Mir-489-v1 Tgu-Mir-489-v2 Tni-Mir-489-v1 Tni-Mir-489-v2 Xla-Mir-489-P1-v1 Xla-Mir-489-P1-v2 Xla-Mir-489-P2-v1 Xla-Mir-489-P2-v2 Xtr-Mir-489-v1 Xtr-Mir-489-v2 |
| Node of Origin (locus) | Osteichthyes |
| Node of Origin (family) | Osteichthyes |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01001500.1: 1527986-1528045 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UAACAGUUAUUUAAUACGUGGUGGCUUGGUGGUCGUAUGUAUGACGUCAUUUACUUGUACUUUUAGGAGUGACAUCAUAUGUACGGCUGCUAAACUGCUACCUGGGACAUCACUUAAGCAGet precursor sequence |
| Structure | 10 20 30 40 50 UAACAGUUAUUUAAUAC--| UG C UG C ACUUGU GUGG G UUGG GUCGUAUGUAUGA GUCAUUU A CAUC C AAUC CGGCAUGUAUACU CAGUGAG C ACGAAUUCACUACAGGGUC^ GU A GU A GAUUUU . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Spt-Mir-489_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GGUCGUAUGUAUGACGUCAUUU -22
Get sequence
|
| Mature sequence | Spt-Mir-489_3p (predicted) |
| mirBase accession | None |
| Sequence |
38- GUGACAUCAUAUGUACGGCUGC -60
Get sequence
|
