MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-489-v1

Family name MIR-489 (all species)
Seed UGACAUC
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-489-v2 
Orthologues Aca-Mir-489-v1  Ami-Mir-489-v1  Bta-Mir-489-v1  Cfa-Mir-489  Cja-Mir-489  Cli-Mir-489-v1  Cpi-Mir-489-v1  Dno-Mir-489  Dre-Mir-489-v1  Eca-Mir-489  Gga-Mir-489-v1  Gja-Mir-489  Gmo-Mir-489-v1  Hsa-Mir-489-v1  Laf-Mir-489  Lch-Mir-489  Mal-Mir-489-v1  Mml-Mir-489-v1  Mmr-Mir-489  Mmu-Mir-489  Mun-Mir-489  Ocu-Mir-489  Pab-Mir-489  Pbv-Mir-489  Rno-Mir-489  Sha-Mir-489  Spt-Mir-489  Tgu-Mir-489-v1  Tni-Mir-489-v1  Xtr-Mir-489-v1 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(LepOcu1)		 LG11: 37047670-37047728 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CGUGUAGGCUGAUAUGCGUGGUGGCUUGGUGGUCGUAUGUAUGACGUCAUUUACUUCAAUGUUUGGAGUGACAUCAUAUGUACGGCUGCUAAACUUCUACAUGGGACAACAGUACUCUU
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Structure
        10          20        30        40        50         
CGUGUAGGCUGAUAUGC--|   U  C    UG             C       ACUUCA 
                   GUGG GG UUGG  GUCGUAUGUAUGA GUCAUUU      \
                   CAUC UC AAUC  CGGCAUGUAUACU CAGUGAG      A
UUCUCAUGACAACAGGGUA^   U  A    GU             A       GUUUGU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Star sequence

Loc-Mir-489-v1_5p*
mirBase accessionNone
Sequence 
0- GGUCGUAUGUAUGACGUCAUUU -22
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Mature sequence

Loc-Mir-489-v1_3p
mirBase accessionNone
Sequence 
37- GUGACAUCAUAUGUACGGCUGC -59
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