MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-489-v1

Family name MIR-489 (all species)
Seed UGACAUC
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-489
Paralogues Ami-Mir-489-v2 
Orthologues Aca-Mir-489-v1  Bta-Mir-489-v1  Cfa-Mir-489  Cja-Mir-489  Cli-Mir-489-v1  Cpi-Mir-489-v1  Dno-Mir-489  Dre-Mir-489-v1  Eca-Mir-489  Gga-Mir-489-v1  Gja-Mir-489  Gmo-Mir-489-v1  Hsa-Mir-489-v1  Laf-Mir-489  Lch-Mir-489  Loc-Mir-489-v1  Mal-Mir-489-v1  Mml-Mir-489-v1  Mmr-Mir-489  Mmu-Mir-489  Mun-Mir-489  Ocu-Mir-489  Pab-Mir-489  Pbv-Mir-489  Rno-Mir-489  Sha-Mir-489  Spt-Mir-489  Tgu-Mir-489-v1  Tni-Mir-489-v1  Xtr-Mir-489-v1 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017712875.1: 7248485-7248544 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-489-v1)		 Mir-489-v2 NW_017712875.1: 7248484-7248545 [-] UCSC
Mir-489-v1 NW_017712875.1: 7248485-7248544 [-] UCSC
Precursor
(pre-Mir +30nt flank)
UAACAGCUUUUUAUUGCGUGGUGGCUUGGUGGUCGUAUGUAUGACGUCAUUUACUUGGACUUUUAGGAGUGACAUCAUAUGUACGGCUGCUAAACUGCUGCAUGGGACAUCAUUUAAGCA
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Structure
        10          20        30        40        50         
UAACAGCUUUUUAUUGC--|UG UG C    UG             C       ACUUGG 
                   G  G  G UUGG  GUCGUAUGUAUGA GUCAUUU      A
                   C  C  C AAUC  CGGCAUGUAUACU CAGUGAG      C
ACGAAUUUACUACAGGGUA^GU GU A    GU             A       GAUUUU 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Ami-Mir-489-v1_5p*
mirBase accessionMIMAT0038295
Sequence 
0- GGUCGUAUGUAUGACGUCAUUU -22
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Mature sequence

Ami-Mir-489-v1_3p
mirBase accessionMIMAT0038296
Sequence 
38- GUGACAUCAUAUGUACGGCUGC -60
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