MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-489-v1

Family name MIR-489 (all species)
Seed UGACAUC
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-489
Paralogues Dre-Mir-489-v2 
Orthologues Aca-Mir-489-v1  Ami-Mir-489-v1  Bta-Mir-489-v1  Cfa-Mir-489  Cja-Mir-489  Cli-Mir-489-v1  Cpi-Mir-489-v1  Dno-Mir-489  Eca-Mir-489  Gga-Mir-489-v1  Gja-Mir-489  Gmo-Mir-489-v1  Hsa-Mir-489-v1  Laf-Mir-489  Lch-Mir-489  Loc-Mir-489-v1  Mal-Mir-489-v1  Mml-Mir-489-v1  Mmr-Mir-489  Mmu-Mir-489  Mun-Mir-489  Ocu-Mir-489  Pab-Mir-489  Pbv-Mir-489  Rno-Mir-489  Sha-Mir-489  Spt-Mir-489  Tgu-Mir-489-v1  Tni-Mir-489-v1  Xtr-Mir-489-v1 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(danRer11)		 chr19: 40781190-40781248 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-489-v1)		 Mir-489-v2 chr19: 40781189-40781249 [-] UCSC Ensembl
Mir-489-v1 chr19: 40781190-40781248 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAAAUGGACUGACUUGAGUGGUGGCCUGGUGGUCGUAUGUAUGACGUCAUUUACUUCAAAGUUUGGAGUGACAUCAUAUGUACGGCUGCUAAACUGCUACAUGGCUCAUCAGAAAGCUC
Get precursor sequence
Structure
        10          20        30        40        50         
CAAAUGGACUGACUUGA--|   UG CC   UG             C       ACUUCA 
                   GUGG  G  UGG  GUCGUAUGUAUGA GUCAUUU      \
                   CAUC  C  AUC  CGGCAUGUAUACU CAGUGAG      A
CUCGAAAGACUACUCGGUA^   GU AA   GU             A       GUUUGA 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-489-v1_5p*
mirBase accessionNone
Sequence 
0- GGUCGUAUGUAUGACGUCAUUU -22
Get sequence
Mature sequence

Dre-Mir-489-v1_3p
mirBase accessionMIMAT0002940
Sequence 
37- GUGACAUCAUAUGUACGGCUGC -59
Get sequence
Proposed targets TargetScanFish: dre-miR-489