MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-489

Family name MIR-489 (all species)
Seed UGACAUC
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-489-v1  Aca-Mir-489-v2  Ami-Mir-489-v1  Ami-Mir-489-v2  Bta-Mir-489-v1  Bta-Mir-489-v2  Bta-Mir-489-v3  Cfa-Mir-489  Cja-Mir-489  Cli-Mir-489-v1  Cli-Mir-489-v2  Cpi-Mir-489-v1  Cpi-Mir-489-v2  Dno-Mir-489  Dre-Mir-489-v1  Dre-Mir-489-v2  Eca-Mir-489  Gga-Mir-489-v1  Gga-Mir-489-v2  Gmo-Mir-489-v1  Gmo-Mir-489-v2  Hsa-Mir-489-v1  Hsa-Mir-489-v2  Laf-Mir-489  Lch-Mir-489  Loc-Mir-489-v1  Loc-Mir-489-v2  Mal-Mir-489-v1  Mal-Mir-489-v2  Mml-Mir-489-v1  Mml-Mir-489-v2  Mmr-Mir-489  Mmu-Mir-489  Mun-Mir-489  Ocu-Mir-489  Pab-Mir-489  Pbv-Mir-489  Rno-Mir-489  Sha-Mir-489  Spt-Mir-489  Tgu-Mir-489-v1  Tgu-Mir-489-v2  Tni-Mir-489-v1  Tni-Mir-489-v2  Xla-Mir-489-P1-v1  Xla-Mir-489-P1-v2  Xla-Mir-489-P2-v1  Xla-Mir-489-P2-v2  Xtr-Mir-489-v1  Xtr-Mir-489-v2 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015172008.1: 309050-309109 [-]
Precursor
(pre-Mir +30nt flank)
UAGCAUUUGCGUAAUGCGUGAUGGCUUGGUGGUCGUAUGUAAGACGUCAUUUACUUGUACUUUUAGGAGUGACAUCAUAUGUACGGCUGCUAAACUGCCACAUGGGACAUCAGUUAUUCA
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Structure
        10          20        30        40        50         
UAGCAUUUGCGUAAUGC--|  AU  C    UG          A  C       ACUUGU 
                   GUG  GG UUGG  GUCGUAUGUA GA GUCAUUU      A
                   CAC  UC AAUC  CGGCAUGUAU CU CAGUGAG      C
ACUUAUUGACUACAGGGUA^  CG  A    GU          A  A       GAUUUU 
.       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Gja-Mir-489_5p* (predicted)
mirBase accessionNone
Sequence 
0- GGUCGUAUGUAAGACGUCAUUU -22
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Mature sequence

Gja-Mir-489_3p (predicted)
mirBase accessionNone
Sequence 
38- GUGACAUCAUAUGUACGGCUGC -60
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