MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-489-v2

Family name MIR-489 (all species)
Seed GACAUCA
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-489
Paralogues Xtr-Mir-489-v1 
Orthologues Aca-Mir-489-v2  Ami-Mir-489-v2  Bta-Mir-489-v2  Cfa-Mir-489  Cja-Mir-489  Cli-Mir-489-v2  Cpi-Mir-489-v2  Dno-Mir-489  Dre-Mir-489-v2  Eca-Mir-489  Gga-Mir-489-v2  Gja-Mir-489  Gmo-Mir-489-v2  Hsa-Mir-489-v2  Laf-Mir-489  Lch-Mir-489  Loc-Mir-489-v2  Mal-Mir-489-v2  Mml-Mir-489-v2  Mmr-Mir-489  Mmu-Mir-489  Mun-Mir-489  Ocu-Mir-489  Pab-Mir-489  Pbv-Mir-489  Rno-Mir-489  Sha-Mir-489  Spt-Mir-489  Tgu-Mir-489-v2  Tni-Mir-489-v2 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(xenTro9_add)		 chr6: 24122622-24122683 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-489-v2)		 Mir-489-v2 chr6: 24122622-24122683 [-] UCSC Ensembl
Mir-489-v1 chr6: 24122623-24122682 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUCGCUGAGACCAUAAUGGUGGUGGCUUAGUGGUCGUAUGUAUGACGUCAUUUACUGGAUUUUUUAGGAGUGACAUCAUAUGUACGGCUGCUAAACUGCUGCAUGACACGUCUGUCUUGGAA
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Structure
        10          20        30        40        50        60
UUCGCUGAGACCAUAAUG--|UG UG C    UG             C      UACUGGA 
                    G  G  G UUAG  GUCGUAUGUAUGA GUCAUU       U
                    C  C  C AAUC  CGGCAUGUAUACU CAGUGA       U
AAGGUUCUGUCUGCACAGUA^GU GU A    GU             A      GGAUUUU 
120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
An Br Em Em He Ve
Star sequence

Xtr-Mir-489-v2_5p*
mirBase accessionNone
Sequence 
0- UGGUCGUAUGUAUGACGUCAUU -22
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Mature sequence

Xtr-Mir-489-v2_3p
mirBase accessionMIMAT0003642
Sequence 
40- UGACAUCAUAUGUACGGCUGCU -62
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Proposed targets TargetScanVert: xtr-miR-489