MirGeneDB 3.0
MirGeneDB ID

Aca-Mir-489-v2

Family name MIR-489 (all species)
Seed GACAUCA
Species Green anole lizard (Anolis carolinensis)
MiRBase ID aca-mir-489
Paralogues Aca-Mir-489-v1 
Orthologues Ami-Mir-489-v2  Bta-Mir-489-v2  Cfa-Mir-489  Cja-Mir-489  Cli-Mir-489-v2  Cpi-Mir-489-v2  Dno-Mir-489  Dre-Mir-489-v2  Eca-Mir-489  Gga-Mir-489-v2  Gja-Mir-489  Gmo-Mir-489-v2  Hsa-Mir-489-v2  Laf-Mir-489  Lch-Mir-489  Loc-Mir-489-v2  Mal-Mir-489-v2  Mml-Mir-489-v2  Mmr-Mir-489  Mmu-Mir-489  Mun-Mir-489  Ocu-Mir-489  Pab-Mir-489  Pbv-Mir-489  Rno-Mir-489  Sha-Mir-489  Spt-Mir-489  Tgu-Mir-489-v2  Tni-Mir-489-v2  Xtr-Mir-489-v2 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(anoCar2)		 6: 21750916-21750977 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-489-v2)		 Mir-489-v2 6: 21750916-21750977 [-] UCSC Ensembl
Mir-489-v1 6: 21750917-21750976 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAUAACAGUUUUUAAUGCGUGAUGGCUUGGUGGUCGUAUGUAUGACGUCAUUUACUUGUUCUUUUAGGAGUGACAUCAUAUGUACGGCUGCUAAACUGCCACAUGGGACAUCAAUUAAGCAA
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Structure
        10        20           30        40        50        60
UAUAACAGUUUUUAAUGC   A    ---|   UG             C      UACUUGU 
                  GUG UGGC   UUGG  GUCGUAUGUAUGA GUCAUU       U
                  UAC ACCG   AAUC  CGGCAUGUAUACU CAGUGA       C
AACGAAUUAACUACAGGG   -    UCA^   GU             A      GGAUUUU 
120       110        100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Sk Ta Ta To Wh
Star sequence

Aca-Mir-489-v2_5p*
mirBase accessionMIMAT0021974
Sequence 
0- UGGUCGUAUGUAUGACGUCAUU -22
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Mature sequence

Aca-Mir-489-v2_3p
mirBase accessionMIMAT0021975
Sequence 
40- UGACAUCAUAUGUACGGCUGCU -62
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